ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_21 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-382E22
Drchr21_MHC-II_FPC_ctg6723
zH382E22
EPN details
FP089550.9
finished
2 CH73-205E12
Drchr21_MHC-II_FPC_ctg6723
zH205E12
EPN details
FP089537.7
finished
3 CH73-341M15
Drchr21_MHC-II_FPC_ctg6723
zH341M15
EPN details
FP085417.10
finished
  GAP (type-2) length unknown    
5 CH73-73O13
Drchr21_MHC-II_FPC_ctg6723
zH73O13
EPN details
FP015973.6
finished
6 CH73-38J13
Drchr21_MHC-II_FPC_ctg6723
zH38J13
EPN details
CU972453.9
finished
7 CH73-7A17
Drchr21_MHC-II_FPC_ctg6723
zH7A17
EPN details
CU929496.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 122586 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP089550.9 1 122586 +
122587 210609 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP089537.7 1 88023 -
210610 292306 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP085417.10 27889 109585 +
292307 342306 4 N 50000 contig yes
342307 438470 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 FP015973.6 1 96164 +
438471 551775 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU972453.9 12494 125798 +
551776 649855 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 7 CU929496.7 1 98080 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-382E22
Drchr21_MHC-II_FPC_ctg6723
zH382E22
EPN details
Analysed
06-AUG-09
FP089550.9
finished
122586 CHORI-73 3' / 3'
122586 / 88023
- / -
10588
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
2 CH73-205E12
Drchr21_MHC-II_FPC_ctg6723
zH205E12
EPN details
Analysed
18-FEB-09
FP089537.7
finished
98611 CHORI-73 5' / 5'
1 / 27889
- / -
27716
0.65
Identified
2014-11-12
fetch_ncbi...
humpub
 
3 CH73-341M15
Drchr21_MHC-II_FPC_ctg6723
zH341M15
EPN details
Analysed
13-JUN-09
FP085417.10
finished
109585 CHORI-73        
  GAP (type-2) length unknown                  
5 CH73-73O13
Drchr21_MHC-II_FPC_ctg6723
zH73O13
EPN details
Analysed
28-MAR-09
FP015973.6
finished
96164 CHORI-73 3' / 5'
96164 / 12494
- / -
12493
0.37
Identified
2014-11-12
fetch_ncbi...
humpub
 
6 CH73-38J13
Drchr21_MHC-II_FPC_ctg6723
zH38J13
EPN details
Analysed
05-MAR-09
CU972453.9
finished
125798 CHORI-73 3' / 3'
125798 / 98080
- / -
3041
0.07
Identified
2014-11-12
fetch_ncbi...
humpub
 
7 CH73-7A17
Drchr21_MHC-II_FPC_ctg6723
zH7A17
EPN details
Analysed
11-JUL-09
CU929496.7
finished
101123 CHORI-73        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
53,838
Total finished length of fin clones w/ overlap
653,867
Total finished length of fin clones w/o overlap
600,029
Total overlap length of fin+unfin clones
53,838
Total finished length of fin+unfin clones w/ overlap
653,867
Total finished length of fin+unfin clones w/o overlap
600,029

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Other links

* quick link - http://q.sanger.ac.uk/8iecsm55