ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_19 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-218H2
Drchr19_MHC-II_FPC_ctg1861
zH218H2
EPN details
FP101858.10
finished
2 CH73-389O5
Drchr19_MHC-II_FPC_ctg1861
zH389O5
EPN details
FP085400.11
finished
3 CH1073-260N23
Drchr19_MHC-II_FPC_ctg1861
zFD260N23
EPN details
FP102460.4
finished
4 CH73-295I22
Drchr19_MHC-II_FPC_ctg1861
zH295I22
EPN details
FP074902.6
finished
5 CH73-62G1
Drchr19_MHC-II_FPC_ctg1861
zH62G1
EPN details
FP067442.4
finished
6 CH73-346O4
Drchr19_MHC-II_FPC_ctg1861
zH346O4
EPN details
FP085415.12
finished
  GAP (type-3) length unknown    
8 CH73-85D12
Drchr19_MHC-II_FPC_ctg1864
zH85D12
EPN details
FP017254.7
finished
9 CH73-130M10
Drchr19_MHC-II_FPC_ctg1864
zH130M10
EPN details
FP067441.5
finished
10 CH1073-121K17
Drchr19_MHC-II_FPC_ctg1864
zFD121K17
EPN details
FP017214.1
finished
11 CH73-341M23
Drchr19_MHC-II_FPC_ctg1864
zH341M23
EPN details
FP085398.5
finished
12 CH1073-396A17
Drchr19_MHC-II_FPC_ctg1864
zFD396A17
EPN details
FP067438.3
finished
13 CH73-276C21
Drchr19_MHC-II_FPC_ctg1864
zH276C21
EPN details
FP102194.5
finished
14 CH73-361O3
Drchr19_MHC-II_FPC_ctg1864
zH361O3
EPN details
FP102904.5
finished
15 CH73-271C2
Drchr19_MHC-II_FPC_ctg1864
zH271C2
EPN details
FP102193.5
finished
16 CH73-337N6
Drchr19_MHC-II_FPC_ctg1864
zH337N6
EPN details
FP085397.6
finished
17 CH73-25F10
Drchr19_MHC-II_FPC_ctg1864
zH25F10
EPN details
FP101887.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 103109 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP101858.10 1 103109 -
103110 184291 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP085400.11 1 81182 -
184292 189291 3 N 5000 No overlap in database    
189292 223998 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP102460.4 1 34707 -
223999 308491 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP074902.6 14987 99479 +
308492 346729 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP067442.4 54875 93112 +
346730 432427 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP085415.12 1 85698 -
432428 482427 8 N 50000 contig no
482428 576632 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 FP017254.7 1 94205 -
576633 676486 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 FP067441.5 1 99854 -
676487 700074 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 FP017214.1 1 23588 -
700075 802922 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 FP085398.5 1 102848 -
802923 823526 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 FP067438.3 1 20604 -
823527 935421 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 14 FP102194.5 8181 120075 +
935422 940421 15 N 5000 No overlap in database    
940422 1044334 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 FP102904.5 1 103913 +
1044335 1104888 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 FP102193.5 1 60554 -
1104889 1109888 18 N 5000 No overlap in database    
1109889 1227127 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 FP085397.6 1 117239 -
1227128 1338919 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 FP101887.5 1 111792 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-218H2
Drchr19_MHC-II_FPC_ctg1861
zH218H2
EPN details
Analysed
28-MAR-09
FP101858.10
finished
103109 CHORI-73 5' / 3'
1 / 81182
- / -
29634
0.59
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 CH73-389O5
Drchr19_MHC-II_FPC_ctg1861
zH389O5
EPN details
Analysed
01-AUG-09
FP085400.11
finished
110818 CHORI-73        
3 CH1073-260N23
Drchr19_MHC-II_FPC_ctg1861
zFD260N23
EPN details
Analysed
18-FEB-09
FP102460.4
finished
34707 CHORI1073 5' / 5'
1 / 14987
- / -
14986
0.01
Identified
2014-04-09
fetch_ncbi...
humpub
 
4 CH73-295I22
Drchr19_MHC-II_FPC_ctg1861
zH295I22
EPN details
Analysed
21-MAY-09
FP074902.6
finished
99479 CHORI-73 3' / 5'
99479 / 54875
- / -
54810
0.12
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CH73-62G1
Drchr19_MHC-II_FPC_ctg1861
zH62G1
EPN details
Analysed
04-MAR-09
FP067442.4
finished
93112 CHORI-73 3' / 3'
93112 / 85698
- / -
20103
20.86
Identified
2014-04-09
fetch_ncbi...
humpub
Certificate submitted, not yet approved
6 CH73-346O4
Drchr19_MHC-II_FPC_ctg1861
zH346O4
EPN details
Analysed
01-JUL-09
FP085415.12
finished
109905 CHORI-73        
  GAP (type-3) length unknown                  
8 CH73-85D12
Drchr19_MHC-II_FPC_ctg1864
zH85D12
EPN details
Analysed
06-MAR-09
FP017254.7
finished
94205 CHORI-73 5' / 3'
1 / 99854
- / -
29118
0.25
Identified
2014-04-09
fetch_ncbi...
humpub
 
9 CH73-130M10
Drchr19_MHC-II_FPC_ctg1864
zH130M10
EPN details
Analysed
29-JAN-09
FP067441.5
finished
129030 CHORI-73 5' / 3'
1 / 23588
- / -
17132
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
10 CH1073-121K17
Drchr19_MHC-II_FPC_ctg1864
zFD121K17
EPN details
Analysed
05-FEB-09
FP017214.1
finished
40720 CHORI1073 5' / 3'
1 / 102848
- / -
14516
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
11 CH73-341M23
Drchr19_MHC-II_FPC_ctg1864
zH341M23
EPN details
Analysed
30-MAY-09
FP085398.5
finished
117364 CHORI-73 5' / 3'
1 / 20604
- / -
15352
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
12 CH1073-396A17
Drchr19_MHC-II_FPC_ctg1864
zFD396A17
EPN details
Analysed
01-APR-09
FP067438.3
finished
35956 CHORI1073 5' / 5'
1 / 8181
- / -
8180
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
13 CH73-276C21
Drchr19_MHC-II_FPC_ctg1864
zH276C21
EPN details
Analysed
10-JUN-09
FP102194.5
finished
120075 CHORI-73        
14 CH73-361O3
Drchr19_MHC-II_FPC_ctg1864
zH361O3
EPN details
Analysed
22-JUL-09
FP102904.5
finished
103913 CHORI-73 3' / 3'
103913 / 60554
- / -
27309
0.01
Identified
2014-04-09
fetch_ncbi...
humpub
 
15 CH73-271C2
Drchr19_MHC-II_FPC_ctg1864
zH271C2
EPN details
Analysed
30-APR-09
FP102193.5
finished
87867 CHORI-73        
16 CH73-337N6
Drchr19_MHC-II_FPC_ctg1864
zH337N6
EPN details
Analysed
15-JUL-09
FP085397.6
finished
117239 CHORI-73 5' / 3'
1 / 111792
- / -
19108
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
17 CH73-25F10
Drchr19_MHC-II_FPC_ctg1864
zH25F10
EPN details
Analysed
17-FEB-09
FP101887.5
finished
130900 CHORI-73        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
16
Clone HTGS Phases
finished
16
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
250,248
Total finished length of fin clones w/ overlap
1,528,399
Total finished length of fin clones w/o overlap
1,278,151
Total overlap length of fin+unfin clones
250,248
Total finished length of fin+unfin clones w/ overlap
1,528,399
Total finished length of fin+unfin clones w/o overlap
1,278,151

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Other links

* quick link - http://q.sanger.ac.uk/wv0kuf3n