ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_19 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-127D16
Drchr19_MHC-I_FPC_ctg1853
zFD127D16
EPN details
FP074867.4
finished
2 CH73-367F21
Drchr19_MHC-I_FPC_ctg1853
zH367F21
EPN details
FP102097.6
finished
3 CH73-213J4
Drchr19_MHC-I_FPC_ctg1853
zH213J4
EPN details
FP085393.7
finished
4 CH73-386O6
Drchr19_MHC-I_FPC_ctg1853
zH386O6
EPN details
FP074889.10
finished
5 CH73-198N16
Drchr19_MHC-I_FPC_ctg1853
zH198N16
EPN details
FP085392.6
finished
6 CH1073-455J15
Drchr19_MHC-I_FPC_ctg1853
zFD455J15
EPN details
FP017221.4
finished
7 CH1073-247J7
Drchr19_MHC-I_FPC_ctg1853
zFD247J7
EPN details
FP101875.6
finished
8 CH73-216M24
Drchr19_MHC-I_FPC_ctg1853
zH216M24
EPN details
FP085394.7
finished
9 CH73-312O15
Drchr19_MHC-I_FPC_ctg1853
zH312O15
EPN details
FP085396.16
finished

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-127D16
Drchr19_MHC-I_FPC_ctg1853
zFD127D16
EPN details
Analysed
27-MAY-09
FP074867.4
finished
31649 CHORI1073 5' / 5'
1 / 3888
- / -
3887
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
2 CH73-367F21
Drchr19_MHC-I_FPC_ctg1853
zH367F21
EPN details
Analysed
19-FEB-09
FP102097.6
finished
102103 CHORI-73 3' / 3'
102103 / 55306
- / -
12294
0
Identified
2014-10-23
find_overl...
humpub
 
3 CH73-213J4
Drchr19_MHC-I_FPC_ctg1853
zH213J4
EPN details
Analysed
04-FEB-14
FP085393.7
finished
67600 CHORI-73 5' / 3'
1 / 82919
- / -
14696
0
Identified
2014-10-23
find_overl...
humpub
 
4 CH73-386O6
Drchr19_MHC-I_FPC_ctg1853
zH386O6
EPN details
Analysed
11-JUL-09
FP074889.10
finished
97615 CHORI-73 5' / 3'
1 / 70629
- / -
17320
0.01
Identified
2014-10-23
fetch_ncbi...
humpub
 
5 CH73-198N16
Drchr19_MHC-I_FPC_ctg1853
zH198N16
EPN details
Analysed
20-JAN-09
FP085392.6
finished
87951 CHORI-73 5' / 5'
1 / 20886
- / -
20885
0.09
Identified
2014-10-23
fetch_ncbi...
humpub
 
6 CH1073-455J15
Drchr19_MHC-I_FPC_ctg1853
zFD455J15
EPN details
Analysed
03-MAR-09
FP017221.4
finished
34005 CHORI1073 3' / 3'
34005 / 35851
- / -
877
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
7 CH1073-247J7
Drchr19_MHC-I_FPC_ctg1853
zFD247J7
EPN details
Analysed
03-JUN-09
FP101875.6
finished
36728 CHORI1073 5' / 5'
1 / 1683
- / -
1682
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
8 CH73-216M24
Drchr19_MHC-I_FPC_ctg1853
zH216M24
EPN details
Analysed
09-JUL-09
FP085394.7
finished
94004 CHORI-73 3' / 3'
94004 / 92083
- / -
38927
0.21
Identified
2014-10-23
fetch_ncbi...
humpub
 
9 CH73-312O15
Drchr19_MHC-I_FPC_ctg1853
zH312O15
EPN details
Analysed
01-OCT-09
FP085396.16
finished
131012 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
9
Clone HTGS Phases
finished
9
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
110,568
Total finished length of fin clones w/ overlap
682,667
Total finished length of fin clones w/o overlap
572,099
Total overlap length of fin+unfin clones
110,568
Total finished length of fin+unfin clones w/ overlap
682,667
Total finished length of fin+unfin clones w/o overlap
572,099

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Other links

* quick link - http://q.sanger.ac.uk/gvu3ezdt