ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-III_16 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-322B17
Drchr16_MHC-III_FPC_ctg1604
zH322B17
EPN details
FP015862.5
finished
2 CH73-86N18
Drchr16_MHC-III_FPC_ctg1604
zH86N18
EPN details
FP085428.6
finished
3 CH73-320A17
Drchr16_MHC-III_FPC_ctg1604
zH320A17
EPN details
FP016055.7
finished
4 CH1073-300G4
Drchr16_MHC-III_FPC_ctg1604
zFD300G4
EPN details
FP236163.9
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 61111 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP015862.5 1 61111 +
61112 143930 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP085428.6 34807 117625 -
143931 231833 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016055.7 1 87903 +
231834 236833 4 N 5000 No overlap in database    
236834 273935 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 FP236163.9 1 37102 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-322B17
Drchr16_MHC-III_FPC_ctg1604
zH322B17
EPN details
Analysed
23-DEC-08
FP015862.5
finished
102248 CHORI-73 3' / 3'
61111 / 117625
- / -
41091
0.11
Identified
2014-10-20
fetch_ncbi...
humpub
 
2 CH73-86N18
Drchr16_MHC-III_FPC_ctg1604
zH86N18
EPN details
Analysed
03-MAR-09
FP085428.6
finished
117625 CHORI-73 5' / 5'
34807 / 1
- / -
34806
0
Identified
2014-10-20
fetch_ncbi...
humpub
 
3 CH73-320A17
Drchr16_MHC-III_FPC_ctg1604
zH320A17
EPN details
Analysed
20-JAN-09
FP016055.7
finished
87903 CHORI-73        
4 CH1073-300G4
Drchr16_MHC-III_FPC_ctg1604
zFD300G4
EPN details
Analysed
31-JUL-09
FP236163.9
finished
37102 CHORI1073        

Statistics

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
75,897
Total finished length of fin clones w/ overlap
344,878
Total finished length of fin clones w/o overlap
268,981
Total overlap length of fin+unfin clones
75,897
Total finished length of fin+unfin clones w/ overlap
344,878
Total finished length of fin+unfin clones w/o overlap
268,981

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Other links

* quick link - http://q.sanger.ac.uk/7iozygt5