ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_16 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-72F5
Drchr16_MHC-I_FPC_ctg1583
zFD72F5
EPN details
FP017157.8
finished
2 CH73-309N4
Drchr16_MHC-I_FPC_ctg1583
zH309N4
EPN details
FP016064.5
finished
3 CH1073-277P1
Drchr16_MHC-I_FPC_ctg1583
zFD277P1
EPN details
CU984574.3
finished
4 CH73-54F23
Drchr16_MHC-I_FPC_ctg1583
zH54F23
EPN details
CU929328.5
finished
5 CH1073-224G1
Drchr16_MHC-I_FPC_ctg1583
zFD224G1
EPN details
FP102367.3
finished
6 CH73-22O12
Drchr16_MHC-I_FPC_ctg1583
zH22O12
EPN details
FP016053.9
finished
7 CH73-158E2
Drchr16_MHC-I_FPC_ctg1583
zH158E2
EPN details
FP102804.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 41162 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017157.8 1 41162 +
41163 122877 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016064.5 1 81715 -
122878 130059 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU984574.3 23881 31062 +
130060 135059 4 N 5000 No overlap in database    
135060 254072 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 CU929328.5 1 119013 -
254073 279058 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 FP102367.3 1 24986 -
279059 418460 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 FP016053.9 1 139402 -
418461 510326 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 8 FP102804.5 1 91866 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-72F5
Drchr16_MHC-I_FPC_ctg1583
zFD72F5
EPN details
Analysed
11-JUL-09
FP017157.8
finished
41162 CHORI1073 3' / 3'
41162 / 81715
- / -
2640
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
2 CH73-309N4
Drchr16_MHC-I_FPC_ctg1583
zH309N4
EPN details
Analysed
12-MAY-09
FP016064.5
finished
84355 CHORI-73 5' / 5'
1 / 23881
- / -
23880
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
3 CH1073-277P1
Drchr16_MHC-I_FPC_ctg1583
zFD277P1
EPN details
Analysed
02-DEC-08
CU984574.3
finished
31062 CHORI1073        
4 CH73-54F23
Drchr16_MHC-I_FPC_ctg1583
zH54F23
EPN details
Analysed
28-MAY-09
CU929328.5
finished
119013 CHORI-73 5' / 3'
1 / 24986
- / -
10075
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
5 CH1073-224G1
Drchr16_MHC-I_FPC_ctg1583
zFD224G1
EPN details
Analysed
28-MAY-09
FP102367.3
finished
35061 CHORI1073 5' / 3'
1 / 139402
- / -
452
0
Identified
2014-10-24
fetch_ncbi...
humpub
 
6 CH73-22O12
Drchr16_MHC-I_FPC_ctg1583
zH22O12
EPN details
Analysed
29-MAY-09
FP016053.9
finished
139854 CHORI-73 5' / 3'
1 / 91866
- / -
5562
0
Identified
2014-02-28
fetch_ncbi...
humpub
 
7 CH73-158E2
Drchr16_MHC-I_FPC_ctg1583
zH158E2
EPN details
Analysed
11-JUN-09
FP102804.5
finished
97428 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
7
Clone HTGS Phases
finished
7
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
42,609
Total finished length of fin clones w/ overlap
547,935
Total finished length of fin clones w/o overlap
505,326
Total overlap length of fin+unfin clones
42,609
Total finished length of fin+unfin clones w/ overlap
547,935
Total finished length of fin+unfin clones w/o overlap
505,326

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Other links

* quick link - http://q.sanger.ac.uk/12vv2iaj