ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_15 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-144M15
Drchr15_MHC-I_FPC_ctg6432
zH144M15
EPN details
FP102309.6
finished
2 CH73-352P12
Drchr15_MHC-I_FPC_ctg6432
zH352P12
EPN details
FP102311.4
finished
3 CH73-108E8
Drchr15_MHC-I_FPC_ctg6432
zH108E8
EPN details
FP017181.6
finished
4 CH73-314B22
Drchr15_MHC-I_FPC_ctg6432
zH314B22
EPN details
FP102072.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 106435 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP102309.6 1 106435 -
106436 205857 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP102311.4 1 99422 -
205858 304909 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP017181.6 1 99052 -
304910 375880 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP102072.8 30710 101680 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-144M15
Drchr15_MHC-I_FPC_ctg6432
zH144M15
EPN details
Analysed
03-JUN-09
FP102309.6
finished
106435 CHORI-73 5' / 3'
1 / 99422
- / -
16138
0.3
Identified
2014-07-25
fetch_ncbi...
humpub
 
2 CH73-352P12
Drchr15_MHC-I_FPC_ctg6432
zH352P12
EPN details
Analysed
14-MAY-09
FP102311.4
finished
115570 CHORI-73 5' / 3'
1 / 99052
- / -
10715
0
Identified
2014-07-25
fetch_ncbi...
humpub
 
3 CH73-108E8
Drchr15_MHC-I_FPC_ctg6432
zH108E8
EPN details
Analysed
10-FEB-09
FP017181.6
finished
109767 CHORI-73 5' / 5'
1 / 30710
- / -
30709
0.01
Identified
2014-07-25
fetch_ncbi...
humpub
 
4 CH73-314B22
Drchr15_MHC-I_FPC_ctg6432
zH314B22
EPN details
Analysed
26-AUG-09
FP102072.8
finished
101680 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
57,562
Total finished length of fin clones w/ overlap
433,452
Total finished length of fin clones w/o overlap
375,890
Total overlap length of fin+unfin clones
57,562
Total finished length of fin+unfin clones w/ overlap
433,452
Total finished length of fin+unfin clones w/o overlap
375,890

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/rv812ne8