ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-III_14 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-271E23
Drchr14_MHC-III_FPC_ctg1407
zH271E23
EPN details
FP015860.6
finished
2 CH73-31A8
Drchr14_MHC-III_FPC_ctg1407
zH31A8
EPN details
CU972516.5
finished
  GAP (type-3) length unknown    
4 CH73-335M24
Drchr14_MHC-III_FPC_ctg1414
zH335M24
EPN details
FP016208.12
finished
5 CH73-127I13
Drchr14_MHC-III_FPC_ctg1414
zH127I13
EPN details
FP003584.5
finished
6 CH73-337P4
Drchr14_MHC-III_FPC_ctg1414
zH337P4
EPN details
FP101912.4
finished
7 CH1073-193F3
Drchr14_MHC-III_FPC_ctg1414
zFD193F3
EPN details
FP085387.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 101570 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP015860.6 1 101570 -
101571 219752 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU972516.5 6187 124368 +
219753 269752 3 N 50000 contig no
269753 397513 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 FP016208.12 1 127761 +
397514 402513 5 N 5000 No overlap in database    
402514 452763 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 FP003584.5 1 50250 +
452764 529988 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 FP101912.4 15693 92917 +
529989 549722 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 8 FP085387.4 1 19734 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-271E23
Drchr14_MHC-III_FPC_ctg1407
zH271E23
EPN details
Analysed
29-JAN-09
FP015860.6
finished
101570 CHORI-73 5' / 5'
1 / 6187
- / -
6186
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
2 CH73-31A8
Drchr14_MHC-III_FPC_ctg1407
zH31A8
EPN details
Analysed
11-DEC-08
CU972516.5
finished
124368 CHORI-73        
  GAP (type-3) length unknown                  
4 CH73-335M24
Drchr14_MHC-III_FPC_ctg1414
zH335M24
EPN details
Analysed
22-APR-09
FP016208.12
finished
127761 CHORI-73        
5 CH73-127I13
Drchr14_MHC-III_FPC_ctg1414
zH127I13
EPN details
Cancelled
23-FEB-11
FP003584.5
finished
50250 CHORI-73 3' / 5'
50250 / 15693
- / -
15692
0
Identified
2009-05-12
find_overl...
humpub
 
6 CH73-337P4
Drchr14_MHC-III_FPC_ctg1414
zH337P4
EPN details
Analysed
12-MAY-09
FP101912.4
finished
101881 CHORI-73 3' / 3'
92917 / 19734
- / -
8965
0
Identified
2014-02-07
find_overl...
humpub
 
7 CH1073-193F3
Drchr14_MHC-III_FPC_ctg1414
zFD193F3
EPN details
Analysed
06-FEB-14
FP085387.4
finished
19734 CHORI1073        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
6
Clone HTGS Phases
finished
6
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
30,843
Total finished length of fin clones w/ overlap
525,564
Total finished length of fin clones w/o overlap
494,721
Total overlap length of fin+unfin clones
30,843
Total finished length of fin+unfin clones w/ overlap
525,564
Total finished length of fin+unfin clones w/o overlap
494,721

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Other links

* quick link - http://q.sanger.ac.uk/toqx3848