ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_14 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-139D6
Drchr14_MHC_FPC_ctg1358
zH139D6
EPN details
FP245526.6
finished
2 CH73-82K19
Drchr14_MHC-II_FPC_ctg1358
zH82K19
EPN details
FP015863.11
finished
3 CH73-168C14
Drchr14_MHC-II_FPC_ctg1358
zH168C14
EPN details
FP017217.21
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 93251 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP245526.6 1 93251 +
93252 183854 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP015863.11 22349 112951 +
183855 285430 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017217.21 1 101576 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-139D6
Drchr14_MHC_FPC_ctg1358
zH139D6
EPN details
Analysed
26-JUN-09
FP245526.6
finished
93251 CHORI-73 3' / 5'
93251 / 22349
- / -
22348
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
2 CH73-82K19
Drchr14_MHC-II_FPC_ctg1358
zH82K19
EPN details
Analysed
25-MAR-09
FP015863.11
finished
112951 CHORI-73 3' / 3'
112951 / 101576
- / -
17435
0.22
Identified
2014-10-21
fetch_ncbi...
humpub
 
3 CH73-168C14
Drchr14_MHC-II_FPC_ctg1358
zH168C14
EPN details
Analysed
28-SEP-10
FP017217.21
finished
119011 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
39,783
Total finished length of fin clones w/ overlap
325,213
Total finished length of fin clones w/o overlap
285,430
Total overlap length of fin+unfin clones
39,783
Total finished length of fin+unfin clones w/ overlap
325,213
Total finished length of fin+unfin clones w/o overlap
285,430

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Other links

* quick link - http://q.sanger.ac.uk/v718o4ju