ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_13 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-106O10
Drchr13_MHC-I_FPC_ctg1339
zH106O10
EPN details
FP015955.6
finished
2 CH73-364A9
Drchr13_MHC-I_FPC_ctg1339
zH364A9
EPN details
FP067401.5
finished
3 CH73-101F17
Drchr13_MHC-I_FPC_ctg1339
zH101F17
EPN details
FP017305.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 99436 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP015955.6 1 99436 +
99437 132668 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP067401.5 37235 70466 -
132669 231342 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017305.7 1 98674 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-106O10
Drchr13_MHC-I_FPC_ctg1339
zH106O10
EPN details
Analysed
18-FEB-09
FP015955.6
finished
99436 CHORI-73 3' / 3'
99436 / 70466
- / -
26035
0.18
Identified
2014-03-28
fetch_ncbi...
humpub
 
2 CH73-364A9
Drchr13_MHC-I_FPC_ctg1339
zH364A9
EPN details
Analysed
09-MAY-09
FP067401.5
finished
96501 CHORI-73 5' / 5'
37235 / 1
- / -
37231
0.22
Identified
2014-03-28
fetch_ncbi...
humpub
 
3 CH73-101F17
Drchr13_MHC-I_FPC_ctg1339
zH101F17
EPN details
Analysed
27-FEB-09
FP017305.7
finished
98674 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
63,266
Total finished length of fin clones w/ overlap
294,611
Total finished length of fin clones w/o overlap
231,345
Total overlap length of fin+unfin clones
63,266
Total finished length of fin+unfin clones w/ overlap
294,611
Total finished length of fin+unfin clones w/o overlap
231,345

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Other links

* quick link - http://q.sanger.ac.uk/6oc8epsf