ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-V_8 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH1073-429L10
Drchr8_MHC-V_FPC_ctg2571
zFD429L10
EPN details
FP017194.4
finished
2 CH73-317K23
Drchr8_MHC-V_FPC_ctg2571
zH317K23
EPN details
FP017199.12
finished
3 CH73-52N1
Drchr8_MHC-V_FPC_ctg2571
zH52N1
EPN details
FP102465.4
finished
  GAP (type-3) length unknown    
5 CH73-112O19
Drchr8_MHC-V_FPC_ctg2006
zH112O19
EPN details
CU984584.10
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 22132 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017194.4 13734 35865 -
22133 106529 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017199.12 1 84397 +
106530 169609 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP102465.4 1 63080 +
169610 219609 4 N 50000 contig no
219610 356599 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CU984584.10 1 136990 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH1073-429L10
Drchr8_MHC-V_FPC_ctg2571
zFD429L10
EPN details
Analysed
09-APR-09
FP017194.4
finished
35865 CHORI1073 5' / 5'
13734 / 1
- / -
13731
0.01
Identified
2011-11-30
fetch_ncbi...
jt8
 
2 CH73-317K23
Drchr8_MHC-V_FPC_ctg2571
zH317K23
EPN details
Analysed
01-JUL-09
FP017199.12
finished
98359 CHORI-73 3' / 5'
84397 / 1
- / -
13962
0
Identified
2011-11-30
fetch_ncbi...
jt8
 
3 CH73-52N1
Drchr8_MHC-V_FPC_ctg2571
zH52N1
EPN details
Analysed
20-MAY-09
FP102465.4
finished
63080 CHORI-73        
  GAP (type-3) length unknown                  
5 CH73-112O19
Drchr8_MHC-V_FPC_ctg2006
zH112O19
EPN details
Analysed
09-APR-09
CU984584.10
finished
136990 CHORI-73        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
27,693
Total finished length of fin clones w/ overlap
334,294
Total finished length of fin clones w/o overlap
306,601
Total overlap length of fin+unfin clones
27,693
Total finished length of fin+unfin clones w/ overlap
334,294
Total finished length of fin+unfin clones w/o overlap
306,601

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Other links

* quick link - http://q.sanger.ac.uk/q5cm5phu