ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-IV_8 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-66P22
Drchr8_MHC-IV_FPC_ctg829
zH66P22
EPN details
FP015811.6
finished
  GAP (type-2) length unknown    
3 CH1073-403I13
Drchr8_MHC-IV_FPC_ctg829
zFD403I13
EPN details
FP085408.3
finished
4 CH73-330C15
Drchr8_MHC-IV_FPC_ctg829
zH330C15
EPN details
FP074877.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 106856 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 FP015811.6 1 106856 +
106857 156856 2 N 50000 contig yes
156857 189524 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 FP085408.3 1 32668 -
189525 291950 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 4 FP074877.8 7485 109910 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-66P22
Drchr8_MHC-IV_FPC_ctg829
zH66P22
EPN details
Cancelled
18-SEP-09
FP015811.6
finished
106856 CHORI-73        
  GAP (type-2) length unknown                  
3 CH1073-403I13
Drchr8_MHC-IV_FPC_ctg829
zFD403I13
EPN details
Analysed
09-APR-09
FP085408.3
finished
32668 CHORI1073 5' / 5'
1 / 7485
- / -
7484
0
Identified
2011-11-30
fetch_ncbi...
jt8
 
4 CH73-330C15
Drchr8_MHC-IV_FPC_ctg829
zH330C15
EPN details
Analysed
30-MAY-09
FP074877.8
finished
109910 CHORI-73        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
7,484
Total finished length of fin clones w/ overlap
249,434
Total finished length of fin clones w/o overlap
241,950
Total overlap length of fin+unfin clones
7,484
Total finished length of fin+unfin clones w/ overlap
249,434
Total finished length of fin+unfin clones w/o overlap
241,950

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Other links

* quick link - http://q.sanger.ac.uk/yvc1g3zt