ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_8 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-272H24
Drchr8_MHC-II_FPC_ctg793
zH272H24
EPN details
FP016182.9
finished
2 CH73-222F22
Drchr8_MHC-II_FPC_ctg793
zH222F22
EPN details
FP067410.4
finished
3 CH73-40N22
Drchr8_MHC-II_FPC_ctg793
zH40N22
EPN details
CU984571.8
finished
4 CH73-109N5
Drchr8_MHC-II_FPC_ctg793
zH109N5
EPN details
FP015821.7
finished
  GAP (type-2) length unknown    
6 CH73-281K2
Drchr8_MHC-II_FPC_ctg793
zH281K2
EPN details
FP016062.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 96240 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP016182.9 1 96240 -
96241 174362 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP067410.4 1 78122 -
174363 272323 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU984571.8 1 97961 -
272324 328745 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP015821.7 53073 109494 +
328746 378745 5 N 50000 contig yes
378746 488079 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 FP016062.4 1 109334 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-272H24
Drchr8_MHC-II_FPC_ctg793
zH272H24
EPN details
Analysed
11-AUG-09
FP016182.9
finished
96240 CHORI-73 5' / 3'
1 / 78122
- / -
23162
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
2 CH73-222F22
Drchr8_MHC-II_FPC_ctg793
zH222F22
EPN details
Analysed
16-MAY-09
FP067410.4
finished
101284 CHORI-73 5' / 3'
1 / 97961
- / -
35489
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
3 CH73-40N22
Drchr8_MHC-II_FPC_ctg793
zH40N22
EPN details
Analysed
24-DEC-08
CU984571.8
finished
133450 CHORI-73 5' / 5'
1 / 53073
- / -
53130
0.11
Identified
2009-02-27
find_overl...
humpub
 
4 CH73-109N5
Drchr8_MHC-II_FPC_ctg793
zH109N5
EPN details
Cancelled
21-SEP-09
FP015821.7
finished
109494 CHORI-73        
  GAP (type-2) length unknown                  
6 CH73-281K2
Drchr8_MHC-II_FPC_ctg793
zH281K2
EPN details
Analysed
25-MAR-09
FP016062.4
finished
109334 CHORI-73        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
111,781
Total finished length of fin clones w/ overlap
549,802
Total finished length of fin clones w/o overlap
438,021
Total overlap length of fin+unfin clones
111,781
Total finished length of fin+unfin clones w/ overlap
549,802
Total finished length of fin+unfin clones w/o overlap
438,021

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Other links

* quick link - http://q.sanger.ac.uk/ah2mu9ki