ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_8 (TPF updated: 2009-01-09)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH73-272H24
Drchr8_MHC-II_FPC_ctg793
zH272H24
FP016182.9
finished
2 CH73-222F22
Drchr8_MHC-II_FPC_ctg793
zH222F22
FP067410.4
finished
3 CH73-40N22
Drchr8_MHC-II_FPC_ctg793
zH40N22
CU984571.8
finished
4 CH73-109N5
Drchr8_MHC-II_FPC_ctg793
zH109N5
FP015821.7
finished
  GAP (type-2) length unknown    
6 CH73-281K2
Drchr8_MHC-II_FPC_ctg793
zH281K2
FP016062.4
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 96240 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP016182.9 1 96240 -
96241 174362 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP067410.4 1 78122 -
174363 272323 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU984571.8 1 97961 -
272324 328745 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 FP015821.7 53073 109494 +
328746 378745 5 N 50000 contig yes
378746 488079 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 6 FP016062.4 1 109334 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
111,781
Total finished length of fin clones w/ overlap
549,802
Total finished length of fin clones w/o overlap
438,021
Total overlap length of fin+unfin clones
111,781
Total finished length of fin+unfin clones w/ overlap
549,802
Total finished length of fin+unfin clones w/o overlap
438,021

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Other links

* quick link - http://q.sanger.ac.uk/ah2mu9ki