ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_8 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-145C23
Drchr8_MHC-I_FPC_ctg768
zH145C23
EPN details
FP015956.11
finished
2 CH73-267A10
Drchr8_MHC-I_FPC_ctg768
zH267A10
EPN details
FP017299.16
finished
3 CH73-294L19
Drchr8_MHC-I_FPC_ctg768
zH294L19
EPN details
FP085395.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 61743 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP015956.11 1 61743 +
61744 119871 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017299.16 45699 103826 -
119872 217225 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP085395.5 1 97354 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-145C23
Drchr8_MHC-I_FPC_ctg768
zH145C23
EPN details
Analysed
23-APR-09
FP015956.11
finished
102204 CHORI-73 3' / 3'
61743 / 103826
- / -
40213
1.88
Identified
2014-08-27
fetch_ncbi...
humpub
Certificate approved
2 CH73-267A10
Drchr8_MHC-I_FPC_ctg768
zH267A10
EPN details
Analysed
29-JUL-09
FP017299.16
finished
103826 CHORI-73 5' / 3'
45699 / 97354
- / -
45698
0.02
Identified
2014-08-27
fetch_ncbi...
humpub
 
3 CH73-294L19
Drchr8_MHC-I_FPC_ctg768
zH294L19
EPN details
Analysed
26-MAR-09
FP085395.5
finished
97354 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
85,911
Total finished length of fin clones w/ overlap
303,384
Total finished length of fin clones w/o overlap
217,473
Total overlap length of fin+unfin clones
85,911
Total finished length of fin+unfin clones w/ overlap
303,384
Total finished length of fin+unfin clones w/o overlap
217,473

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Other links

* quick link - http://q.sanger.ac.uk/dju5emre