ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_5 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-198E16
Drchr5_MHC-II_FPC_ctg442
zH198E16
EPN details
FP016255.7
finished
2 CH73-137I19
Drchr5_MHC-II_FPC_ctg442
zH137I19
EPN details
FP101909.6
finished
3 CH73-275A14
Drchr5_MHC-II_FPC_ctg442
zH275A14
EPN details
FP017183.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 112903 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016255.7 1 112903 +
112904 189781 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP101909.6 1 76878 -
189782 249308 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP017183.6 49881 109407 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-198E16
Drchr5_MHC-II_FPC_ctg442
zH198E16
EPN details
Analysed
16-MAY-09
FP016255.7
finished
112903 CHORI-73 3' / 3'
112903 / 76878
- / -
29266
0.02
Identified
2014-10-31
fetch_ncbi...
humpub
 
2 CH73-137I19
Drchr5_MHC-II_FPC_ctg442
zH137I19
EPN details
Analysed
17-FEB-09
FP101909.6
finished
106145 CHORI-73 5' / 5'
1 / 49881
- / -
49872
0.12
Identified
2014-10-31
fetch_ncbi...
humpub
 
3 CH73-275A14
Drchr5_MHC-II_FPC_ctg442
zH275A14
EPN details
Analysed
19-MAY-09
FP017183.6
finished
109407 CHORI-73        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
79,138
Total finished length of fin clones w/ overlap
328,455
Total finished length of fin clones w/o overlap
249,317
Total overlap length of fin+unfin clones
79,138
Total finished length of fin+unfin clones w/ overlap
328,455
Total finished length of fin+unfin clones w/o overlap
249,317

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Other links

* quick link - http://q.sanger.ac.uk/kyrts82t