ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_3 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-46H18
Drchr3_MHC-I_FPC_ctg269
zH46H18
EPN details
FP016243.4
finished
2 CH73-33I10
Drchr3_MHC-I_FPC_ctg269
zH33I10
EPN details
FP016144.3
finished
3 CH1073-455J6
Drchr3_MHC-I_FPC_ctg269
zFD455J6
EPN details
CU993817.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 121744 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016243.4 1 121744 +
121745 209588 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016144.3 1 87844 +
209589 242336 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU993817.4 1 32748 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-46H18
Drchr3_MHC-I_FPC_ctg269
zH46H18
EPN details
Analysed
16-MAY-09
FP016243.4
finished
129600 CHORI-73 3' / 5'
121744 / 1
- / -
7856
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
2 CH73-33I10
Drchr3_MHC-I_FPC_ctg269
zH33I10
EPN details
Analysed
14-MAY-09
FP016144.3
finished
105292 CHORI-73 3' / 5'
87844 / 1
- / -
17448
0.22
Identified
2014-10-21
fetch_ncbi...
humpub
 
3 CH1073-455J6
Drchr3_MHC-I_FPC_ctg269
zFD455J6
EPN details
Analysed
10-MAR-09
CU993817.4
finished
32748 CHORI1073        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
25,304
Total finished length of fin clones w/ overlap
267,640
Total finished length of fin clones w/o overlap
242,336
Total overlap length of fin+unfin clones
25,304
Total finished length of fin+unfin clones w/ overlap
267,640
Total finished length of fin+unfin clones w/o overlap
242,336

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Other links

* quick link - http://q.sanger.ac.uk/mzyo5ebf