ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-II_2 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-9B13
Drchr2_MHC-II_FPC_ctg168
zH9B13
EPN details
FP067402.3
finished
2 CH73-100G16
Drchr2_MHC-II_FPC_ctg168
zH100G16
EPN details
FP067409.8
finished
3 CH73-12O5
Drchr2_MHC-II_FPC_ctg168
zH12O5
EPN details
FP236741.6
finished
4 CH1073-225K6
Drchr2_MHC-II_FPC_ctg168
zFD225K6
EPN details
FP015808.5
finished
5 CH73-27J14
Drchr2_MHC-II_FPC_ctg168
zH27J14
EPN details
FP016213.8
finished
6 CH73-369J21
Drchr2_MHC-II_FPC_ctg168
zH369J21
EPN details
FP016241.9
finished
  GAP (type-2) length unknown    
8 CH73-385H6
Drchr2_MHC-II_FPC_ctg168
zH385H6
EPN details
FP017218.6
finished
9 CH73-170I24
Drchr2_MHC-II_FPC_ctg168
zH170I24
EPN details
FP015916.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 127394 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP067402.3 1 127394 -
127395 223183 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 FP067409.8 15920 111708 +
223184 228183 3 N 5000 No overlap in database    
228184 366100 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP236741.6 1 137917 +
366101 396282 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP015808.5 1 30182 -
396283 523369 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP016213.8 10256 137342 +
523370 567424 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 7 FP016241.9 1 44055 -
567425 617424 8 N 50000 contig yes
617425 737841 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 FP017218.6 1 120417 +
737842 834218 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 10 FP015916.6 9802 106178 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-9B13
Drchr2_MHC-II_FPC_ctg168
zH9B13
EPN details
Analysed
07-MAY-09
FP067402.3
finished
127394 CHORI-73 5' / 5'
1 / 15920
- / -
15919
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
2 CH73-100G16
Drchr2_MHC-II_FPC_ctg168
zH100G16
EPN details
Analysed
24-MAR-09
FP067409.8
finished
111708 CHORI-73        
3 CH73-12O5
Drchr2_MHC-II_FPC_ctg168
zH12O5
EPN details
Analysed
20-MAY-09
FP236741.6
finished
137917 CHORI-73 3' / 3'
137917 / 30182
- / -
3644
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
4 CH1073-225K6
Drchr2_MHC-II_FPC_ctg168
zFD225K6
EPN details
Analysed
24-DEC-08
FP015808.5
finished
33826 CHORI1073 5' / 5'
1 / 10256
- / -
10245
0.1
Identified
2014-09-18
fetch_ncbi...
humpub
 
5 CH73-27J14
Drchr2_MHC-II_FPC_ctg168
zH27J14
EPN details
Analysed
12-MAY-09
FP016213.8
finished
137342 CHORI-73 3' / 3'
137342 / 44055
- / -
68128
0.02
Identified
2014-09-18
fetch_ncbi...
humpub
 
6 CH73-369J21
Drchr2_MHC-II_FPC_ctg168
zH369J21
EPN details
Analysed
30-JUN-09
FP016241.9
finished
112189 CHORI-73        
  GAP (type-2) length unknown                  
8 CH73-385H6
Drchr2_MHC-II_FPC_ctg168
zH385H6
EPN details
Analysed
13-MAY-09
FP017218.6
finished
120417 CHORI-73 3' / 5'
120417 / 9802
- / -
9801
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
9 CH73-170I24
Drchr2_MHC-II_FPC_ctg168
zH170I24
EPN details
Analysed
05-DEC-08
FP015916.6
finished
106178 CHORI-73        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
8
Clone HTGS Phases
finished
8
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
107,737
Total finished length of fin clones w/ overlap
886,971
Total finished length of fin clones w/o overlap
779,234
Total overlap length of fin+unfin clones
107,737
Total finished length of fin+unfin clones w/ overlap
886,971
Total finished length of fin+unfin clones w/o overlap
779,234

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Other links

* quick link - http://q.sanger.ac.uk/aeixlkzf