ChromoView - clone / Assembly sequencing status

Zebrafish: Sub region MHC-I_1 (TPF updated: 2009-01-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH73-383F21
Drchr1_MHC-I_FPC_ctg84
zH383F21
EPN details
FP016183.6
finished
2 CH73-160H15
Drchr1_MHC-I_FPC_ctg84
zH160H15
EPN details
CU986305.4
finished
3 CH1073-228E23
Drchr1_MHC-I_FPC_ctg84
zFD228E23
EPN details
FP015984.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 118071 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP016183.6 1 118071 +
118072 195927 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 CU986305.4 8970 86825 +
195928 218804 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 3 FP015984.3 8953 31829 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH73-383F21
Drchr1_MHC-I_FPC_ctg84
zH383F21
EPN details
Analysed
06-MAR-09
FP016183.6
finished
118071 CHORI-73 3' / 5'
118071 / 8970
- / -
8969
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
2 CH73-160H15
Drchr1_MHC-I_FPC_ctg84
zH160H15
EPN details
Analysed
20-NOV-08
CU986305.4
finished
86825 CHORI-73 3' / 5'
86825 / 8953
- / -
8952
0
Identified
2014-09-18
fetch_ncbi...
humpub
 
3 CH1073-228E23
Drchr1_MHC-I_FPC_ctg84
zFD228E23
EPN details
Analysed
02-DEC-08
FP015984.3
finished
31829 CHORI1073        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
17,921
Total finished length of fin clones w/ overlap
236,725
Total finished length of fin clones w/o overlap
218,804
Total overlap length of fin+unfin clones
17,921
Total finished length of fin+unfin clones w/ overlap
236,725
Total finished length of fin+unfin clones w/o overlap
218,804

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Other links

* quick link - http://q.sanger.ac.uk/rdvpet2f