ChromoView - clone / Assembly sequencing status

Pig: Chromosome U (TPF updated: 2012-08-29)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 PigE-29D16
ctg20927
bT29D16

-
  GAP (type-3) length unknown    
3 PigE-38F3
ctg20928
bT38F3

-
  GAP (type-2) length unknown    
  GAP (type-3) length unknown    
6 PigI-598C9
ctg30006
bI598C9
FP085608.1
unfinished
7 PigI-437A9
ctg30006
bI437A9
FP101904.2
unfinished
8 PigI-148B7
ctg30006
bI148B7
FP236246.1
unfinished
9 PigI-521H5
ctg30006
bI521H5
FP102388.1
unfinished
10 PigI-491F11
ctg30006
bI491F11
FP085361.1
unfinished
11 PigI-759D9
ctg30006
bI759D9
FP102766.1
unfinished
12 PigI-644C12
ctg30006
bI644C12
FP085609.1
unfinished
13 PigI-398E11
ctg30006
bI398E11
FP085360.1
unfinished
14 PigI-131C8
ctg30006
bI131C8

-
15 PigI-657F11
ctg30006
bI657F11
FP085426.1
unfinished
16 PigI-436E4
ctg30006
bI436E4
FP102387.1
unfinished
  GAP (type-3) length unknown    
18 CH242-74M3
ctg30008
bE74M3
FP015876.3
finished
  GAP (type-3) length unknown    
20 CH242-155F24
ctg30009
bE155F24
FP312877.2
unfinished
21 CH242-3K19
ctg30009
bE3K19
CU571362.2
unfinished
22 CH242-171F7
ctg30009
bE171F7
CU856325.3
unfinished
23 CH242-506D3
ctg30009
bE506D3
FP236739.3
unfinished
  GAP (type-3) length unknown    

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 100000 2 N 50000 contig no
100001 150000 3 N 50000 clone no
150001 200000 4 N 50000 contig yes
200001 250000 5 N 50000 contig no
250001 300000 6 N 50000 clone no
300001 350000 7 N 50000 clone yes
350001 400000 8 N 50000 clone yes
400001 450000 9 N 50000 clone yes
450001 500000 10 N 50000 clone yes
500001 550000 11 N 50000 clone yes
550001 600000 12 N 50000 clone yes
600001 650000 13 N 50000 clone yes
650001 700000 14 N 50000 clone yes
700001 750000 15 N 50000 clone yes
750001 800000 16 N 50000 clone no
800001 850000 17 N 50000 contig no
850001 1019238 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 FP015876.3 1 169238 +
1019239 1069238 19 N 50000 contig no
1069239 1119238 20 N 50000 clone no
1119239 1169238 21 N 50000 clone yes
1169239 1219238 22 N 50000 clone yes
1219239 1269238 23 N 50000 clone no
1269239 1319238 24 N 50000 contig no

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
6
Gap types
type-2
1
type-3
5
Total clones
18
Clone HTGS Phases
finished
1
unfinished
14
Number of clones w/o accession
3
Clones w/o htgs phase
3
Non-htgs clonenames
PigE-29D16 (project unknown), PigE-38F3 (project unknown), PigI-131C8 (project unknown)

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
169,238
Total finished length of fin clones w/o overlap
169,238
Total overlap length of fin+unfin clones
48,610
Total finished length of fin+unfin clones w/ overlap
1,719,585
Total finished length of fin+unfin clones w/o overlap
1,670,975

Dovetails

# rank accession status length date
1 7 FP101904.2 unfinished 469 Sun, 05 Jul 2015 01:43
2 8 FP236246.1 unfinished 2,440 Sun, 05 Jul 2015 01:43
3 9 FP102388.1 unfinished 3,759 Sun, 05 Jul 2015 01:43
4 9 FP102388.1 unfinished 20,565 Sun, 05 Jul 2015 01:43
5 10 FP085361.1 unfinished 84 Sun, 05 Jul 2015 01:43
6 10 FP085361.1 unfinished 61,258 Sun, 05 Jul 2015 01:43
7 11 FP102766.1 unfinished 39,139 Sun, 05 Jul 2015 01:43
8 12 FP085609.1 unfinished 2,497 Sun, 05 Jul 2015 01:43
9 13 FP085360.1 unfinished 59,797 Sun, 05 Jul 2015 01:43
10 16 FP102387.1 unfinished 38,844 Sun, 05 Jul 2015 01:43
11 22 CU856325.3 unfinished 33,997 Sun, 05 Jul 2015 01:43
12 22 CU856325.3 unfinished 6,900 Sun, 05 Jul 2015 01:43

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Other links

* quick link - http://q.sanger.ac.uk/lugxwfcf