ChromoView - clone / Assembly sequencing status

Human: Sub region LRC_PGF_2 (TPF updated: 2008-03-11)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH501-637J10
chr19_lrc_pgf_ctg2
bPG637J10
EPN details
CU104682.1
finished
  GAP (type-4) length 5000 bps    
3 CH501-554J19
chr19_lrc_pgf_ctg2
bPG554J19
EPN details
CU467612.4
finished
  GAP (type-4) length 5000 bps    
5 CH501-525F11
chr19_lrc_pgf_ctg2
bPG525F11
EPN details
CU467816.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 147446 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU104682.1 1 147446 +
147447 152446 2 N 5000 contig no
152447 238817 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CU467612.4 1 86371 +
238818 243817 4 N 5000 contig no
243818 305783 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CU467816.3 1 61966 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH501-637J10
chr19_lrc_pgf_ctg2
bPG637J10
EPN details
Submitted to EMBL
12-JAN-09
CU104682.1
finished
147446 CHORI-501        
  GAP (type-4) length 5000 bps                  
3 CH501-554J19
chr19_lrc_pgf_ctg2
bPG554J19
EPN details
Submitted to EMBL
12-JAN-09
CU467612.4
finished
86371 CHORI-501        
  GAP (type-4) length 5000 bps                  
5 CH501-525F11
chr19_lrc_pgf_ctg2
bPG525F11
EPN details
QC Checked
06-MAY-09
CU467816.3
finished
61966 CHORI-501        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-4
2
Total clones
3
Clone HTGS Phases
finished
3
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
295,783
Total finished length of fin clones w/o overlap
295,783
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
295,783
Total finished length of fin+unfin clones w/o overlap
295,783

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Other links

* quick link - http://q.sanger.ac.uk/twm020ci