ChromoView - clone / Assembly sequencing status

Human: Sub region LRC_PGF_1 (TPF updated: 2008-03-11)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH501-111L9
chr19_lrc_pgf_ctg1
bPG111L9
EPN details
CU151838.1
finished
  GAP (type-4) length 5000 bps    
3 CH501-638F6
chr19_lrc_pgf_ctg1
bPG638F6
EPN details
CU207370.12
finished
4 CH501-541D20
chr19_lrc_pgf_ctg1
bPG541D20
EPN details
CU024913.1
finished
5 CH501-184J6
chr19_lrc_pgf_ctg1
bPG184J6
EPN details
CU041368.1
finished
6 CH501-230H20
chr19_lrc_pgf_ctg1
bPG230H20
EPN details
CU151839.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 125570 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU151838.1 1 125570 +
125571 130570 2 N 5000 contig no
130571 273097 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 CU207370.12 1 142527 +
273098 446826 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 CU024913.1 2001 175729 +
446827 579666 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 CU041368.1 2001 134840 +
579667 767774 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 6 CU151839.1 8138 196245 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH501-111L9
chr19_lrc_pgf_ctg1
bPG111L9
EPN details
Submitted to EMBL
12-JAN-09
CU151838.1
finished
125570 CHORI-501        
  GAP (type-4) length 5000 bps                  
3 CH501-638F6
chr19_lrc_pgf_ctg1
bPG638F6
EPN details
Submitted to EMBL
12-JAN-09
CU207370.12
finished
142527 CHORI-501 3' / 5'
142527 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
4 CH501-541D20
chr19_lrc_pgf_ctg1
bPG541D20
EPN details
Submitted to EMBL
12-JAN-09
CU024913.1
finished
175729 CHORI-501 3' / 5'
175729 / 2001
- / -
2000
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
5 CH501-184J6
chr19_lrc_pgf_ctg1
bPG184J6
EPN details
Submitted to EMBL
12-JAN-09
CU041368.1
finished
134840 CHORI-501 3' / 5'
134840 / 8138
- / -
8137
0
Identified
2014-04-09
fetch_ncbi...
humpub
 
6 CH501-230H20
chr19_lrc_pgf_ctg1
bPG230H20
EPN details
Submitted to EMBL
12-JAN-09
CU151839.1
finished
196245 CHORI-501        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-4
1
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
12,137
Total finished length of fin clones w/ overlap
774,911
Total finished length of fin clones w/o overlap
762,774
Total overlap length of fin+unfin clones
12,137
Total finished length of fin+unfin clones w/ overlap
774,911
Total finished length of fin+unfin clones w/o overlap
762,774

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Other links

* quick link - http://q.sanger.ac.uk/b4g803en