ChromoView - clone / Assembly sequencing status

Human: Sub region huntington (TPF updated: 2003-03-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP11-262P20

bA262P20
EPN details
AL132868.24
finished
2 RP11-317B7

bA317B7
EPN details
AL136360.21
finished
3 RP11-478C1

bA478C1
EPN details
AL158068.18
finished
4 RP11-503N18

bA503N18
EPN details
AL645924.13
finished
5 RP11-478A6

bA478A6
EPN details
AL359379.10
finished
6 RP11-48L6
type-1
bA48L6
EPN details
BX322586.11
finished
7 RP3-474M20

dJ474M20
EPN details
AL110117.3
finished
8 RP3-323A24

dJ323A24
EPN details
AL121750.22
finished
9 LA04NC01-25A3

cL25A3
EPN details
Z68280.1
finished
10 RP11-520M5

bA520M5
EPN details
AL390065.20
finished
11 RP11-399E10

bA399E10
EPN details
AL390059.10
finished
12 RP11-357G3

bA357G3
EPN details
AL645949.16
finished
13 RP11-529E10

bA529E10
EPN details
AL590235.23
finished
14 RP3-368B9

dJ368B9
EPN details
AL121796.17
finished
15 RP3-513G18

dJ513G18
EPN details
AL109760.3
finished
16 LA04NC01-228A7

cL228A7
EPN details
Z54272.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 191444 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL132868.24 2001 193444 -
191445 295171 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL136360.21 1 103727 -
295172 469509 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL158068.18 2001 176338 -
469510 636193 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 AL645924.13 2000 168683 -
636194 652971 5 F AL359379.10
Double 3-prime join to 'AL359379.10'
1 16778 +
652972 657971 6 N 5000 Bad overlap - double 3 prime join    
657972 714170 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 BX322586.11 647 56845 -
714171 841493 8 F AL110117.3
Double 5-prime join to 'AL110117.3'
2001 129323 -
841494 846493 9 N 5000 Bad overlap - double 5 prime join    
846494 996462 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL121750.22 1 149969 -
996463 1015582 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 Z68280.1 21026 40145 -
1015583 1170701 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL390065.20 2001 157119 -
1170702 1369081 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL390059.10 2000 200379 -
1369082 1514232 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL645949.16 1 145151 -
1514233 1671478 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL590235.23 1 157246 -
1671479 1738926 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL121796.17 2001 69448 -
1738927 1840601 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 AL109760.3 10886 112560 -
1840602 1855413 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 18 Z54272.1 1 14812 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP11-262P20

bA262P20
EPN details
Submitted to EMBL
12-JAN-09
AL132868.24
finished
193444 RPCI-11.1 5' / 3'
2001 / 103727
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
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2 RP11-317B7

bA317B7
EPN details
Submitted to EMBL
12-JAN-09
AL136360.21
finished
103727 RPCI-11.2 5' / 3'
1 / 176338
- / -
1999
0.55
Identified
2014-09-22
fetch_ncbi...
humpub
 
3 RP11-478C1

bA478C1
EPN details
Submitted to EMBL
12-JAN-09
AL158068.18
finished
178338 RPCI-11.2 5' / 3'
2001 / 168683
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
4 RP11-503N18

bA503N18
EPN details
Submitted to EMBL
12-JAN-09
AL645924.13
finished
168683 RPCI-11.2 5' / 3'
2000 / 16778
- / -
2000
0.1
Identified
2003-03-25
find_overl...
badger
 
5 RP11-478A6

bA478A6
EPN details
Submitted to EMBL
16-MAY-05
AL359379.10
finished
16778 RPCI-11.2 3' / 3'
16778 / 56845
- / -
5776
0
Identified
2004-07-16
find_overl...
badger
 
6 RP11-48L6
type-1
bA48L6
EPN details
Submitted to EMBL
12-JAN-09
BX322586.11
finished
62621 RPCI-11.1 5' / 5'
647 / 37578
646 / 37530
47
10.64
Identified
2004-07-16
find_overl...
badger
 
7 RP3-474M20

dJ474M20
EPN details
Submitted to EMBL
12-JAN-09
AL110117.3
finished
129323 RPCI-3 5' / 3'
2001 / 149969
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
8 RP3-323A24

dJ323A24
EPN details
Submitted to EMBL
12-JAN-09
AL121750.22
finished
149969 RPCI-3 5' / 3'
1 / 40145
- / -
3438
0.06
Identified
2004-07-16
find_overl...
badger
 
9 LA04NC01-25A3

cL25A3
EPN details
Submitted to EMBL
16-MAY-05
Z68280.1
finished
43583 LA04NC01 5' / 3'
21026 / 157119
- / -
21035
0.15
Identified
2003-03-25
find_overl...
badger
 
10 RP11-520M5

bA520M5
EPN details
Submitted to EMBL
12-JAN-09
AL390065.20
finished
157119 RPCI-11.2 5' / 3'
2001 / 200379
- / -
2000
0.05
Identified
2014-09-22
fetch_ncbi...
humpub
 
11 RP11-399E10

bA399E10
EPN details
Submitted to EMBL
12-JAN-09
AL390059.10
finished
200379 RPCI-11.2 5' / 3'
2000 / 145151
- / -
1999
0.4
Identified
2014-09-22
fetch_ncbi...
humpub
 
12 RP11-357G3

bA357G3
EPN details
Submitted to EMBL
12-JAN-09
AL645949.16
finished
145151 RPCI-11.2 5' / 3'
1 / 157246
- / -
2000
7
Identified
2014-09-22
fetch_ncbi...
humpub
Certificate approved
13 RP11-529E10

bA529E10
EPN details
Submitted to EMBL
12-JAN-09
AL590235.23
finished
159246 RPCI-11.2 5' / 3'
1 / 69448
- / -
63424
2.11
Identified
2014-09-22
fetch_ncbi...
humpub
Certificate approved
14 RP3-368B9

dJ368B9
EPN details
Submitted to EMBL
12-JAN-09
AL121796.17
finished
133066 RPCI-3 5' / 3'
2001 / 112560
- / -
2000
0.3
Identified
2014-09-22
fetch_ncbi...
humpub
 
15 RP3-513G18

dJ513G18
EPN details
Submitted to EMBL
12-JAN-09
AL109760.3
finished
112560 RPCI-3 5' / 3'
10886 / 14812
- / -
10885
0.21
Identified
2014-09-22
fetch_ncbi...
humpub
 
16 LA04NC01-228A7

cL228A7
EPN details
Submitted to EMBL
07-MAY-08
Z54272.1
finished
14812 LA04NC01        

Statistics

Clone Summary

Number of gaps
0
Total clones
16
Clone HTGS Phases
finished
16
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
122,603
Total finished length of fin clones w/ overlap
62,621
Total finished length of fin clones w/o overlap
-59,982
Total overlap length of fin+unfin clones
122,603
Total finished length of fin+unfin clones w/ overlap
62,621
Total finished length of fin+unfin clones w/o overlap
-59,982

AGP errors

# rank accession seq_start seq_end strand error date
1 5 AL359379.10 1 16,778 1 Double 3-prime join to 'AL359379.10' Sun, 21 Sep 2014 23:51

Dovetails

# rank accession status length date
1 6 BX322586.11 unfinished 646 Sun, 21 Sep 2014 23:51
2 7 AL110117.3 unfinished 37,530 Sun, 21 Sep 2014 23:51

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Other links

* quick link - http://q.sanger.ac.uk/0u12s238