ChromoView - clone / Assembly sequencing status

Pig: Sub region ENr232 (TPF updated: 2008-02-27)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH242-68C14
Pig_1ctg1003
bE68C14
EPN details
CU076102.21
finished
2 CH242-13F23
Pig_1ctg1003
bE13F23
EPN details
CU041302.13
contiguous
3 CH242-249J11
Pig_1ctg1003
bE249J11
EPN details
CU457469.16
unfinished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 219318 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU076102.21 1 219318 +
219319 437404 2 A CU041302.13 8643 226728 +
437405 487404 3 N 50000 clone no

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH242-68C14
Pig_1ctg1003
bE68C14
EPN details
Analysed
22-FEB-08
CU076102.21
finished
219318 CHORI-242 3' / 5'
219318 / 8643
- / -
8645
0.13
Identified
2009-11-29
find_overl...
humpub
 
2 CH242-13F23
Pig_1ctg1003
bE13F23
EPN details
Assigned to finisher
08-OCT-08
CU041302.13
contiguous
226728 CHORI-242 3' / 3'
225004 / 30677
1458 / 737
273
13.54
Identified
2010-01-27
find_overl...
humpub
 
3 CH242-249J11
Pig_1ctg1003
bE249J11
EPN details
Auto-prefinishing complete
07-AUG-07
CU457469.16
unfinished
31414 CHORI-242        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
contiguous
1
finished
1
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
219,318
Total finished length of fin clones w/o overlap
219,318
Total overlap length of fin+unfin clones
8,918
Total finished length of fin+unfin clones w/ overlap
477,460
Total finished length of fin+unfin clones w/o overlap
468,542

Dovetails

# rank accession status length date
1 2 CU041302.13 unfinished 1,458 Mon, 24 Nov 2014 01:05
2 3 CU457469.16 unfinished 737 Mon, 24 Nov 2014 01:05

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Other links

* quick link - http://q.sanger.ac.uk/qo8pjt9l