ChromoView - clone / Assembly sequencing status

Human: Sub region LRC_COX_1 (TPF updated: 2008-03-11)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH502-105G6
chr19_lrc_cox_ctg1
bCX105G6
EPN details
CU457734.2
finished
  GAP (type-4) length 5000 bps    
3 CH502-535A19
chr19_lrc_cox_ctg1
bCX535A19
EPN details
CU467002.2
finished
4 CH502-85G21
chr19_lrc_cox_ctg1
bCX85G21
EPN details
CU234142.1
finished
5 CH502-360G3
chr19_lrc_cox_ctg1
bCX360G3
EPN details
CU459007.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 182001 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CU457734.2 1 182001 +
182002 187001 2 N 5000 contig no
187002 308752 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 CU467002.2 1 121751 +
308753 426376 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 CU234142.1 2001 119624 +
426377 572860 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 5 CU459007.1 2001 148484 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH502-105G6
chr19_lrc_cox_ctg1
bCX105G6
EPN details
Submitted to EMBL
12-JAN-09
CU457734.2
finished
182001 CHORI-502        
  GAP (type-4) length 5000 bps                  
3 CH502-535A19
chr19_lrc_cox_ctg1
bCX535A19
EPN details
Submitted to EMBL
12-JAN-09
CU467002.2
finished
121751 CHORI-502 3' / 5'
121751 / 2001
- / -
2000
0
Identified
2014-09-02
fetch_ncbi...
humpub
 
4 CH502-85G21
chr19_lrc_cox_ctg1
bCX85G21
EPN details
Submitted to EMBL
12-JAN-09
CU234142.1
finished
119624 CHORI-502 3' / 5'
119624 / 2001
- / -
2000
0
Identified
2014-09-02
fetch_ncbi...
humpub
 
5 CH502-360G3
chr19_lrc_cox_ctg1
bCX360G3
EPN details
Submitted to EMBL
12-JAN-09
CU459007.1
finished
148484 CHORI-502        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-4
1
Total clones
4
Clone HTGS Phases
finished
4
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
571,860
Total finished length of fin clones w/o overlap
567,860
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
571,860
Total finished length of fin+unfin clones w/o overlap
567,860

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Other links

* quick link - http://q.sanger.ac.uk/o4chh7u0