ChromoView - clone / Assembly sequencing status

Mouse: Sub region CHO_IDD1 (TPF updated: 2008-04-01)

TPF

Help

# Clone ext/Contig Clone int Acc/Fin
1 CH29-16G7
chr17_CHO_IDD1
bCN16G7
CU405655.14
finished
2 CH29-136I23
chr17_CHO_IDD1
bCN136I23
CU406960.9
finished
3 CH29-502I11
chr17_CHO_IDD1
bCN502I11
CU407132.14
finished
4 CH29-525B18
chr17_CHO_IDD1
bCN525B18
CU424424.15
finished
5 CH29-594M24
chr17_CHO_IDD1
bCN594M24
CU407311.8
finished
6 CH29-490B7
chr17_CHO_IDD1
bCN490B7
CU407310.14
finished
7 CH29-21F6
chr17_CHO_IDD1
bCN21F6
CU406965.9
finished
8 CH29-26K20
chr17_CHO_IDD1
bCN26K20
CU406966.9
finished
9 CH29-167B15
chr17_CHO_IDD1
bCN167B15
CU406961.7
finished
10 CH29-488C17
chr17_CHO_IDD1
bCN488C17
CU407309.9
finished
11 CH29-159H6
chr17_CHO_IDD1
bCN159H6
CU442726.8
finished
  GAP (type-2) length unknown    
13 CH29-548L14
chr17_CHO_IDD1
bCN548L14
CU467500.8
finished
14 CH29-73A3
chr17_CHO_IDD1
bCN73A3
CU367883.10
finished
15 CH29-160I20
chr17_CHO_IDD1
bCN160I20
CU457375.18
finished
16 CH29-511L9
chr17_CHO_IDD1
bCN511L9
CU406999.8
finished
17 CH29-33F16
chr17_CHO_IDD1
bCN33F16
CU406998.9
finished
  GAP (type-2) length unknown    
19 CH29-542E11
chr17_CHO_IDD1
bCN542E11
CU463040.8
finished
20 CH29-99H23
chr17_CHO_IDD1
bCN99H23
CU407123.9
finished
21 CH29-68L23
chr17_CHO_IDD1
bCN68L23
CU369188.7
finished
22 CH29-495C20
chr17_CHO_IDD1
bCN495C20
CU463184.5
finished
23 CH29-161B12
chr17_CHO_IDD1
bCN161B12
CU459195.4
finished
24 CH29-38K16
chr17_CHO_IDD1
bCN38K16
CU459049.7
finished
25 CH29-547C13
chr17_CHO_IDD1
bCN547C13
CU463185.6
finished
26 CH29-540E17
chr17_CHO_IDD1
bCN540E17
CU462908.7
finished
27 CH29-16N15
chr17_CHO_IDD1
bCN16N15
CU459042.15
finished
28 CH29-502G10
chr17_CHO_IDD1
bCN502G10
CU462863.24
finished
29 CH29-100E15
chr17_CHO_IDD1
bCN100E15
CU462875.11
finished
30 CH29-28D15
chr17_CHO_IDD1
bCN28D15
CU462907.10
finished
31 CH29-489B21
chr17_CHO_IDD1
bCN489B21
CU462864.4
finished

AGP

Help

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 216161 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU405655.14 1 216161 +
216162 398534 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406960.9 1843 184215 +
398535 502816 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407132.14 2001 106282 +
502817 648365 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU424424.15 2001 147549 +
648366 829325 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407311.8 2001 182960 +
829326 983647 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407310.14 2001 156322 +
983648 1211677 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406965.9 1584 229613 +
1211678 1282044 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406966.9 2001 72367 +
1282045 1517566 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU406961.7 2001 237522 +
1517567 1657695 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU407309.9 2001 142129 +
1657696 1804105 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 11 CU442726.8 2001 148410 +
1804106 1854105 12 N 50000 contig yes
1854106 1945370 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU467500.8 1 91265 +
1945371 2186612 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU367883.10 2001 243242 +
2186613 2320759 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU457375.18 2001 136147 +
2320760 2525132 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU406999.8 2001 206373 +
2525133 2655590 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 17 CU406998.9 2001 132458 +
2655591 2705590 18 N 50000 contig yes
2705591 2857545 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU463040.8 1 151955 +
2857546 3083309 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU407123.9 2001 227764 +
3083310 3336240 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU369188.7 2001 254931 +
3336241 3458925 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU463184.5 2001 124685 +
3458926 3473035 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU459195.4 9733 23842 +
3473036 3713017 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU459049.7 2001 241982 +
3713018 3846035 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU463185.6 2001 135018 +
3846036 4018761 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU462908.7 38387 211112 +
4018762 4132140 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU459042.15 102939 216317 +
4132141 4293119 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU462863.24 2001 162979 +
4293120 4516664 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU462875.11 2001 225545 +
4516665 4698892 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU462907.10 2001 184228 +
4698893 4910976 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 31 CU462864.4 2001 214084 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

Help

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
29
Clone HTGS Phases
finished
29
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
196,480
Total finished length of fin clones w/ overlap
5,007,457
Total finished length of fin clones w/o overlap
4,810,977
Total overlap length of fin+unfin clones
196,480
Total finished length of fin+unfin clones w/ overlap
5,007,457
Total finished length of fin+unfin clones w/o overlap
4,810,977

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/2dpyq8fq