ChromoView - clone / Assembly sequencing status

Gibbon: Chromosome U (TPF updated: 2007-03-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH271-183B5
Gib_ctg1
bGB183B5
EPN details
CT954289.3
finished
  GAP (type-3) length unknown    
3 CH271-224A19
Gib_ctg1
bGB224A19
EPN details
CT954290.4
finished
  GAP (type-3) length unknown    
5 CH271-227B3
Gib_ctg1
bGB227B3
EPN details
CT954291.6
finished
  GAP (type-3) length unknown    
7 CH271-228C1
Gib_ctg1
bGB228C1
EPN details
CT954292.2
finished
  GAP (type-3) length unknown    
9 CH271-228N13
Gib_ctg1
bGB228N13
EPN details
CT954293.6
finished
  GAP (type-3) length unknown    
11 CH271-228P23
Gib_ctg1
bGB228P23
EPN details
CT954294.19
finished
  GAP (type-3) length unknown    
13 CH271-229G23
Gib_ctg1
bGB229G23
EPN details
CT954295.2
finished
  GAP (type-3) length unknown    
15 CH271-236L11
Gib_ctg1
bGB236L11
EPN details
CT990551.3
finished
  GAP (type-3) length unknown    
17 CH271-246M2
Gib_ctg1
bGB246M2
EPN details
CT954296.11
finished
  GAP (type-3) length unknown    
19 CH271-254H12
Gib_ctg1
bGB254H12
EPN details
CT954297.11
finished
  GAP (type-3) length unknown    
21 CH271-261A22
Gib_ctg1
bGB261A22
EPN details
CT954298.5
finished
  GAP (type-3) length unknown    
23 CH271-261H3
Gib_ctg1
bGB261H3
EPN details
CT954299.8
finished
  GAP (type-3) length unknown    
25 CH271-261K6
Gib_ctg1
bGB261K6
EPN details
CT954300.6
finished
  GAP (type-3) length unknown    
27 CH271-261L1
Gib_ctg1
bGB261L1
EPN details
CT954301.7
finished
  GAP (type-3) length unknown    
29 CH271-262E11
Gib_ctg1
bGB262E11
EPN details
CT954302.6
finished
  GAP (type-3) length unknown    
31 CH271-263C9
Gib_ctg1
bGB263C9
EPN details
CT954303.4
finished
  GAP (type-3) length unknown    
33 CH271-263K8
Gib_ctg1
bGB263K8
EPN details
CT990552.5
finished
  GAP (type-3) length unknown    
35 CH271-267G23
Gib_ctg1
bGB267G23
EPN details
CT954304.8
finished
  GAP (type-3) length unknown    
37 CH271-269B20
Gib_ctg1
bGB269B20
EPN details
CT954305.14
finished
  GAP (type-3) length unknown    
39 CH271-269J8
Gib_ctg1
bGB269J8
EPN details
CT990553.6
finished
  GAP (type-3) length unknown    
41 CH271-269N7
Gib_ctg1
bGB269N7
EPN details
CT954306.5
finished
  GAP (type-3) length unknown    
43 CH271-270A22
Gib_ctg1
bGB270A22
EPN details
CT954307.11
finished
  GAP (type-3) length unknown    
45 CH271-270L3
Gib_ctg1
bGB270L3
EPN details
CT990554.14
finished
  GAP (type-3) length unknown    
47 CH271-273H20
Gib_ctg1
bGB273H20
EPN details
CT954308.7
finished
  GAP (type-3) length unknown    
49 CH271-275G5
Gib_ctg1
bGB275G5
EPN details
CT954309.16
finished
  GAP (type-3) length unknown    
51 CH271-286K22
Gib_ctg1
bGB286K22
EPN details
CT954310.8
finished
  GAP (type-3) length unknown    
53 CH271-286L21
Gib_ctg1
bGB286L21
EPN details
CT954311.9
finished
  GAP (type-3) length unknown    
55 CH271-298N13
Gib_ctg1
bGB298N13
EPN details
CT990555.8
finished
  GAP (type-3) length unknown    
57 CH271-350B17
Gib_ctg1
bGB350B17
EPN details
CT990556.8
finished
  GAP (type-3) length unknown    
59 CH271-372B11
Gib_ctg1
bGB372B11
EPN details
CT954312.5
finished
  GAP (type-3) length unknown    
61 CH271-383I9
Gib_ctg1
bGB383I9
EPN details
CT954313.6
finished
  GAP (type-3) length unknown    
63 CH271-398E1
Gib_ctg1
bGB398E1
EPN details
CT954314.7
finished
  GAP (type-3) length unknown    
65 CH271-411O21
Gib_ctg1
bGB411O21
EPN details
CT954315.7
finished
  GAP (type-3) length unknown    
67 CH271-411O5
Gib_ctg1
bGB411O5
EPN details
CT954316.4
finished
  GAP (type-3) length unknown    
69 CH271-446I8
Gib_ctg1
bGB446I8
EPN details
CT990557.10
finished
  GAP (type-3) length unknown    
71 CH271-467F13
Gib_ctg1
bGB467F13
EPN details
CT954317.3
finished
  GAP (type-3) length unknown    
73 CH271-46M23
Gib_ctg1
bGB46M23
EPN details
CT954318.8
finished
  GAP (type-3) length unknown    
75 CH271-49D13
Gib_ctg1
bGB49D13
EPN details
CT954319.9
finished
  GAP (type-3) length unknown    
77 CH271-78K20
Gib_ctg1
bGB78K20
EPN details
CT954320.5
finished
  GAP (type-3) length unknown    
79 CH271-86M19
Gib_ctg1
bGB86M19
EPN details
CT954321.3
finished
  GAP (type-3) length unknown    
81 CH271-91H2
Gib_ctg1
bGB91H2
EPN details
CT954322.9
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 213328 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CT954289.3 1 213328 +
213329 263328 2 N 50000 contig no
263329 431896 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CT954290.4 1 168568 +
431897 481896 4 N 50000 contig no
481897 655347 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 CT954291.6 1 173451 +
655348 705347 6 N 50000 contig no
705348 878298 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CT954292.2 1 172951 +
878299 928298 8 N 50000 contig no
928299 1080279 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CT954293.6 1 151981 +
1080280 1130279 10 N 50000 contig no
1130280 1298048 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CT954294.19 1 167769 +
1298049 1348048 12 N 50000 contig no
1348049 1497923 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 13 CT954295.2 1 149875 +
1497924 1547923 14 N 50000 contig no
1547924 1711155 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 CT990551.3 1 163232 +
1711156 1761155 16 N 50000 contig no
1761156 1950606 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 CT954296.11 1 189451 +
1950607 2000606 18 N 50000 contig no
2000607 2195408 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 CT954297.11 1 194802 +
2195409 2245408 20 N 50000 contig no
2245409 2476435 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 21 CT954298.5 1 231027 +
2476436 2526435 22 N 50000 contig no
2526436 2705779 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 23 CT954299.8 1 179344 +
2705780 2755779 24 N 50000 contig no
2755780 2914904 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CT954300.6 1 159125 +
2914905 2964904 26 N 50000 contig no
2964905 3151171 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 27 CT954301.7 1 186267 +
3151172 3201171 28 N 50000 contig no
3201172 3396642 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CT954302.6 1 195471 +
3396643 3446642 30 N 50000 contig no
3446643 3616811 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CT954303.4 1 170169 +
3616812 3666811 32 N 50000 contig no
3666812 3882764 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 CT990552.5 1 215953 +
3882765 3932764 34 N 50000 contig no
3932765 4118817 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CT954304.8 1 186053 +
4118818 4168817 36 N 50000 contig no
4168818 4338099 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CT954305.14 1 169282 +
4338100 4388099 38 N 50000 contig no
4388100 4566362 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 CT990553.6 1 178263 +
4566363 4616362 40 N 50000 contig no
4616363 4692739 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 CT954306.5 1 76377 +
4692740 4742739 42 N 50000 contig no
4742740 4942106 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 CT954307.11 1 199367 +
4942107 4992106 44 N 50000 contig no
4992107 5167760 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CT990554.14 1 175654 +
5167761 5217760 46 N 50000 contig no
5217761 5387582 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CT954308.7 1 169822 +
5387583 5437582 48 N 50000 contig no
5437583 5611984 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 49 CT954309.16 1 174402 +
5611985 5661984 50 N 50000 contig no
5661985 5853796 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 51 CT954310.8 1 191812 +
5853797 5903796 52 N 50000 contig no
5903797 6088703 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 53 - 53 CT954311.9 1 184907 +
6088704 6138703 54 N 50000 contig no
6138704 6332350 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 55 CT990555.8 1 193647 +
6332351 6382350 56 N 50000 contig no
6382351 6577234 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 57 - 57 CT990556.8 1 194884 +
6577235 6627234 58 N 50000 contig no
6627235 6809329 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 59 CT954312.5 1 182095 +
6809330 6859329 60 N 50000 contig no
6859330 7068330 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 61 CT954313.6 1 209001 +
7068331 7118330 62 N 50000 contig no
7118331 7219245 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 63 - 63 CT954314.7 1 100915 +
7219246 7269245 64 N 50000 contig no
7269246 7349145 65 FClick to retrieve finished assembled sequence in green bar: rank(s) 65 - 65 CT954315.7 1 79900 +
7349146 7399145 66 N 50000 contig no
7399146 7577730 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 67 - 67 CT954316.4 1 178585 +
7577731 7627730 68 N 50000 contig no
7627731 7810996 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 69 CT990557.10 1 183266 +
7810997 7860996 70 N 50000 contig no
7860997 7975388 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 71 - 71 CT954317.3 1 114392 +
7975389 8025388 72 N 50000 contig no
8025389 8217335 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 73 - 73 CT954318.8 1 191947 +
8217336 8267335 74 N 50000 contig no
8267336 8422667 75 FClick to retrieve finished assembled sequence in green bar: rank(s) 75 - 75 CT954319.9 1 155332 +
8422668 8472667 76 N 50000 contig no
8472668 8635963 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 77 - 77 CT954320.5 1 163296 +
8635964 8685963 78 N 50000 contig no
8685964 8836060 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CT954321.3 1 150097 +
8836061 8886060 80 N 50000 contig no
8886061 9050727 81 FClick to retrieve finished assembled sequence in green bar: rank(s) 81 - 81 CT954322.9 1 164667 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH271-183B5
Gib_ctg1
bGB183B5
EPN details
Analysed
28-JUN-06
CT954289.3
finished
213328 CHORI-271        
  GAP (type-3) length unknown                  
3 CH271-224A19
Gib_ctg1
bGB224A19
EPN details
Analysed
19-JUL-06
CT954290.4
finished
168568 CHORI-271        
  GAP (type-3) length unknown                  
5 CH271-227B3
Gib_ctg1
bGB227B3
EPN details
Analysed
27-SEP-06
CT954291.6
finished
173451 CHORI-271        
  GAP (type-3) length unknown                  
7 CH271-228C1
Gib_ctg1
bGB228C1
EPN details
Analysed
28-JUN-06
CT954292.2
finished
172951 CHORI-271        
  GAP (type-3) length unknown                  
9 CH271-228N13
Gib_ctg1
bGB228N13
EPN details
Analysed
02-AUG-06
CT954293.6
finished
151981 CHORI-271        
  GAP (type-3) length unknown                  
11 CH271-228P23
Gib_ctg1
bGB228P23
EPN details
Analysed
13-FEB-07
CT954294.19
finished
167769 CHORI-271        
  GAP (type-3) length unknown                  
13 CH271-229G23
Gib_ctg1
bGB229G23
EPN details
Analysed
03-JUN-06
CT954295.2
finished
149875 CHORI-271        
  GAP (type-3) length unknown                  
15 CH271-236L11
Gib_ctg1
bGB236L11
EPN details
Analysed
03-AUG-06
CT990551.3
finished
163232 CHORI-271        
  GAP (type-3) length unknown                  
17 CH271-246M2
Gib_ctg1
bGB246M2
EPN details
Analysed
23-AUG-06
CT954296.11
finished
189451 CHORI-271        
  GAP (type-3) length unknown                  
19 CH271-254H12
Gib_ctg1
bGB254H12
EPN details
Analysed
03-OCT-06
CT954297.11
finished
194802 CHORI-271        
  GAP (type-3) length unknown                  
21 CH271-261A22
Gib_ctg1
bGB261A22
EPN details
Analysed
27-JUL-06
CT954298.5
finished
231027 CHORI-271        
  GAP (type-3) length unknown                  
23 CH271-261H3
Gib_ctg1
bGB261H3
EPN details
Analysed
05-OCT-06
CT954299.8
finished
179344 CHORI-271        
  GAP (type-3) length unknown                  
25 CH271-261K6
Gib_ctg1
bGB261K6
EPN details
Analysed
18-JUL-06
CT954300.6
finished
159125 CHORI-271        
  GAP (type-3) length unknown                  
27 CH271-261L1
Gib_ctg1
bGB261L1
EPN details
Analysed
26-JUL-06
CT954301.7
finished
186267 CHORI-271        
  GAP (type-3) length unknown                  
29 CH271-262E11
Gib_ctg1
bGB262E11
EPN details
Analysed
03-AUG-06
CT954302.6
finished
195471 CHORI-271        
  GAP (type-3) length unknown                  
31 CH271-263C9
Gib_ctg1
bGB263C9
EPN details
Analysed
20-JUL-06
CT954303.4
finished
170169 CHORI-271        
  GAP (type-3) length unknown                  
33 CH271-263K8
Gib_ctg1
bGB263K8
EPN details
Analysed
27-SEP-06
CT990552.5
finished
215953 CHORI-271        
  GAP (type-3) length unknown                  
35 CH271-267G23
Gib_ctg1
bGB267G23
EPN details
Analysed
06-DEC-06
CT954304.8
finished
186053 CHORI-271        
  GAP (type-3) length unknown                  
37 CH271-269B20
Gib_ctg1
bGB269B20
EPN details
Analysed
11-JAN-07
CT954305.14
finished
169282 CHORI-271        
  GAP (type-3) length unknown                  
39 CH271-269J8
Gib_ctg1
bGB269J8
EPN details
Analysed
27-SEP-06
CT990553.6
finished
178263 CHORI-271        
  GAP (type-3) length unknown                  
41 CH271-269N7
Gib_ctg1
bGB269N7
EPN details
Analysed
19-JUL-06
CT954306.5
finished
76377 CHORI-271        
  GAP (type-3) length unknown                  
43 CH271-270A22
Gib_ctg1
bGB270A22
EPN details
Analysed
15-MAR-07
CT954307.11
finished
199367 CHORI-271        
  GAP (type-3) length unknown                  
45 CH271-270L3
Gib_ctg1
bGB270L3
EPN details
Analysed
08-NOV-06
CT990554.14
finished
175654 CHORI-271        
  GAP (type-3) length unknown                  
47 CH271-273H20
Gib_ctg1
bGB273H20
EPN details
Analysed
20-SEP-06
CT954308.7
finished
169822 CHORI-271        
  GAP (type-3) length unknown                  
49 CH271-275G5
Gib_ctg1
bGB275G5
EPN details
Analysed
23-NOV-06
CT954309.16
finished
174402 CHORI-271        
  GAP (type-3) length unknown                  
51 CH271-286K22
Gib_ctg1
bGB286K22
EPN details
Analysed
09-NOV-06
CT954310.8
finished
191812 CHORI-271        
  GAP (type-3) length unknown                  
53 CH271-286L21
Gib_ctg1
bGB286L21
EPN details
Analysed
31-AUG-06
CT954311.9
finished
184907 CHORI-271        
  GAP (type-3) length unknown                  
55 CH271-298N13
Gib_ctg1
bGB298N13
EPN details
Analysed
18-JAN-07
CT990555.8
finished
193647 CHORI-271        
  GAP (type-3) length unknown                  
57 CH271-350B17
Gib_ctg1
bGB350B17
EPN details
Analysed
21-DEC-06
CT990556.8
finished
194884 CHORI-271        
  GAP (type-3) length unknown                  
59 CH271-372B11
Gib_ctg1
bGB372B11
EPN details
Analysed
27-JUL-06
CT954312.5
finished
182095 CHORI-271        
  GAP (type-3) length unknown                  
61 CH271-383I9
Gib_ctg1
bGB383I9
EPN details
Analysed
08-AUG-06
CT954313.6
finished
209001 CHORI-271        
  GAP (type-3) length unknown                  
63 CH271-398E1
Gib_ctg1
bGB398E1
EPN details
Analysed
22-AUG-06
CT954314.7
finished
100915 CHORI-271        
  GAP (type-3) length unknown                  
65 CH271-411O21
Gib_ctg1
bGB411O21
EPN details
Analysed
15-DEC-06
CT954315.7
finished
79900 CHORI-271        
  GAP (type-3) length unknown                  
67 CH271-411O5
Gib_ctg1
bGB411O5
EPN details
Analysed
18-JUL-06
CT954316.4
finished
178585 CHORI-271        
  GAP (type-3) length unknown                  
69 CH271-446I8
Gib_ctg1
bGB446I8
EPN details
Analysed
12-OCT-06
CT990557.10
finished
183266 CHORI-271        
  GAP (type-3) length unknown                  
71 CH271-467F13
Gib_ctg1
bGB467F13
EPN details
Analysed
11-JUL-06
CT954317.3
finished
114392 CHORI-271        
  GAP (type-3) length unknown                  
73 CH271-46M23
Gib_ctg1
bGB46M23
EPN details
Analysed
05-SEP-06
CT954318.8
finished
191947 CHORI-271        
  GAP (type-3) length unknown                  
75 CH271-49D13
Gib_ctg1
bGB49D13
EPN details
Analysed
30-JAN-07
CT954319.9
finished
155332 CHORI-271        
  GAP (type-3) length unknown                  
77 CH271-78K20
Gib_ctg1
bGB78K20
EPN details
Analysed
13-JUL-06
CT954320.5
finished
163296 CHORI-271        
  GAP (type-3) length unknown                  
79 CH271-86M19
Gib_ctg1
bGB86M19
EPN details
Analysed
22-AUG-06
CT954321.3
finished
150097 CHORI-271        
  GAP (type-3) length unknown                  
81 CH271-91H2
Gib_ctg1
bGB91H2
EPN details
Analysed
31-OCT-06
CT954322.9
finished
164667 CHORI-271        

Statistics

Clone Summary

Number of gaps
40
Gap types
type-3
40
Total clones
41
Clone HTGS Phases
finished
41
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
7,050,727
Total finished length of fin clones w/o overlap
7,050,727
Total overlap length of fin+unfin clones
0
Total finished length of fin+unfin clones w/ overlap
7,050,727
Total finished length of fin+unfin clones w/o overlap
7,050,727

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Other links

* quick link - http://q.sanger.ac.uk/dahr1dw5