ChromoView - clone / Assembly sequencing status

Pig: Sub region CH242_MHC_2 (TPF updated: 2007-03-16)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CH242-215D15
Pig_7ctg7002
bE215D15
CT737383.11
finished
2 CH242-278M5
Pig_7ctg7002
bE278M5

-
  GAP (type-1) length unknown    
4 CH242-213K14
Pig_7ctg7002
bE213K14
CU468849.16
finished
5 CH242-173D7
Pig_7ctg7002
bE173D7
CT797454.6
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 192635 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CT737383.11 1 192635 +
192636 242635 2 N 50000 clone no
242636 292635 3 N 50000 contig yes
292636 486069 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CU468849.16 1 193434 -
486070 657329 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CT797454.6 1 171260 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-1
1
Total clones
4
Clone HTGS Phases
finished
3
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH242-278M5 (project unknown)

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
559,329
Total finished length of fin clones w/o overlap
557,329
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
559,329
Total finished length of fin+unfin clones w/o overlap
557,329

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Other links

* quick link - http://q.sanger.ac.uk/ayx5znq6