ChromoView - clone / Assembly sequencing status

Pig: Sub region CH242_MHC_2 (TPF updated: 2007-03-16)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH242-215D15
Pig_7ctg7002
bE215D15
EPN details
CT737383.11
finished
2 CH242-278M5
Pig_7ctg7002
bE278M5
EPN details

-
  GAP (type-1) length unknown    
4 CH242-213K14
Pig_7ctg7002
bE213K14
EPN details
CU468849.16
finished
5 CH242-173D7
Pig_7ctg7002
bE173D7
EPN details
CT797454.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 192635 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 CT737383.11 1 192635 +
192636 242635 2 N 50000 clone no
242636 292635 3 N 50000 contig yes
292636 486069 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CU468849.16 1 193434 -
486070 657329 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CT797454.6 1 171260 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH242-215D15
Pig_7ctg7002
bE215D15
EPN details
Analysed
20-SEP-07
CT737383.11
finished
192635 CHORI-242        
2 CH242-278M5
Pig_7ctg7002
bE278M5
EPN details
Cancelled
23-MAY-07

-
- CHORI-242        
  GAP (type-1) length unknown                  
4 CH242-213K14
Pig_7ctg7002
bE213K14
EPN details
Analysed
20-NOV-08
CU468849.16
finished
193434 CHORI-242 5' / 3'
1 / 171260
- / -
2000
0
Identified
2008-11-20
find_overl...
humpub
 
5 CH242-173D7
Pig_7ctg7002
bE173D7
EPN details
Analysed
20-APR-07
CT797454.6
finished
173260 CHORI-242        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-1
1
Total clones
4
Clone HTGS Phases
finished
3
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CH242-278M5 (bE278M5)

Overlap Summary

Total overlap length of fin clones
2,000
Total finished length of fin clones w/ overlap
559,329
Total finished length of fin clones w/o overlap
557,329
Total overlap length of fin+unfin clones
2,000
Total finished length of fin+unfin clones w/ overlap
559,329
Total finished length of fin+unfin clones w/o overlap
557,329

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Other links

* quick link - http://q.sanger.ac.uk/ayx5znq6