ChromoView - clone / Assembly sequencing status

Pig: Sub region CH242_MHC_1 (TPF updated: 2007-03-16)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH242-485A8
Pig_7ctg7001
bE485A8
EPN details
CU062578.9
finished
2 CH242-264E8
Pig_7ctg7001
bE264E8
EPN details
CU313307.7
finished
  GAP (type-2) length unknown    
4 CH242-196B23
Pig_7ctg7001
bE196B23
EPN details
CU311184.7
finished
5 CH242-47O8
Pig_7ctg7001
bE47O8
EPN details
CT737425.8
finished
  GAP (type-2) length unknown    
7 CH242-307A21
Pig_7ctg7001
bE307A21
EPN details
CU407197.9
finished
8 CH242-137G6
Pig_7ctg7001
bE137G6
EPN details
CU041263.7
finished
  GAP (type-2) length unknown    
10 CH242-198M20
Pig_7ctg7001
bE198M20
EPN details
CU326403.12
finished
11 CH242-239H1
Pig_7ctg7001
bE239H1
EPN details
CT971577.8
finished
12 CH242-102G9
Pig_7ctg7001
bE102G9
EPN details
CT737281.12
finished
  GAP (type-2) length unknown    
14 CH242-183N12
Pig_7ctg7001
bE183N12
EPN details
CT956038.9
finished
15 CH242-404E7
Pig_7ctg7001
bE404E7
EPN details
CT954269.12
finished
  GAP (type-1) length unknown    

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 230995 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU062578.9 1 230995 +
230996 346446 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU313307.7 1 115451 -
346447 396446 3 N 50000 contig yes
396447 557981 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CU311184.7 1 161535 +
557982 731681 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CT737425.8 1 173700 +
731682 781681 6 N 50000 contig yes
781682 900961 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CU407197.9 63585 182864 -
900962 1094697 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 CU041263.7 1 193736 +
1094698 1144697 9 N 50000 contig yes
1144698 1332191 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CU326403.12 53819 241312 -
1332192 1512776 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CT971577.8 1 180585 +
1512777 1699825 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 12 CT737281.12 2001 189049 +
1699826 1749825 13 N 50000 contig yes
1749826 1935679 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 CT956038.9 1 185854 -
1935680 2111157 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 15 CT954269.12 42149 217626 +
2111158 2161157 16 N 50000 contig yes

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH242-485A8
Pig_7ctg7001
bE485A8
EPN details
Analysed
13-JUL-07
CU062578.9
finished
230995 CHORI-242 3' / 3'
230995 / 115451
- / -
91522
0.56
Identified
2009-12-15
find_overl...
humpub
 
2 CH242-264E8
Pig_7ctg7001
bE264E8
EPN details
Analysed
15-DEC-09
CU313307.7
finished
206881 CHORI-242        
  GAP (type-2) length unknown                  
4 CH242-196B23
Pig_7ctg7001
bE196B23
EPN details
Analysed
25-AUG-07
CU311184.7
finished
166596 CHORI-242 3' / 5'
161535 / 1
3487 / -
1592
2.67
Identified
2009-03-12
find_overl...
humpub
 
5 CH242-47O8
Pig_7ctg7001
bE47O8
EPN details
Analysed
21-APR-07
CT737425.8
finished
173700 CHORI-242        
  GAP (type-2) length unknown                  
7 CH242-307A21
Pig_7ctg7001
bE307A21
EPN details
Analysed
08-JAN-08
CU407197.9
finished
182864 CHORI-242 5' / 5'
63585 / 1
61865 / -
1722
1.57
Identified
2007-12-21
find_overl...
humpub
 
8 CH242-137G6
Pig_7ctg7001
bE137G6
EPN details
Analysed
21-APR-07
CU041263.7
finished
193736 CHORI-242        
  GAP (type-2) length unknown                  
10 CH242-198M20
Pig_7ctg7001
bE198M20
EPN details
Cancelled
19-JUL-10
CU326403.12
finished
241312 CHORI-242 5' / 5'
53819 / 1
- / -
53896
0.88
Identified
2009-03-12
find_overl...
humpub
 
11 CH242-239H1
Pig_7ctg7001
bE239H1
EPN details
Analysed
26-JUN-07
CT971577.8
finished
180585 CHORI-242 3' / 5'
180585 / 2001
- / -
2000
0
Identified
2007-07-05
find_overl...
gjc
 
12 CH242-102G9
Pig_7ctg7001
bE102G9
EPN details
Analysed
06-JAN-07
CT737281.12
finished
189049 CHORI-242        
  GAP (type-2) length unknown                  
14 CH242-183N12
Pig_7ctg7001
bE183N12
EPN details
Analysed
26-JUN-07
CT956038.9
finished
185854 CHORI-242 5' / 5'
1 / 42149
- / 15764
26394
0.74
Identified
2008-10-21
find_overl...
humpub
 
15 CH242-404E7
Pig_7ctg7001
bE404E7
EPN details
Analysed
21-OCT-08
CT954269.12
finished
217626 CHORI-242        
  GAP (type-1) length unknown                  

Statistics

Clone Summary

Number of gaps
5
Gap types
type-1
1
type-2
4
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
177,126
Total finished length of fin clones w/ overlap
2,169,198
Total finished length of fin clones w/o overlap
1,992,072
Total overlap length of fin+unfin clones
177,126
Total finished length of fin+unfin clones w/ overlap
2,169,198
Total finished length of fin+unfin clones w/o overlap
1,992,072

Dovetails

# rank accession status length date
1 4 CU311184.7 unfinished 3,487 Fri, 31 Oct 2014 01:27
2 7 CU407197.9 unfinished 61,865 Fri, 31 Oct 2014 01:27
3 15 CT954269.12 unfinished 15,764 Fri, 31 Oct 2014 01:27

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Other links

* quick link - http://q.sanger.ac.uk/4mapaw79