ChromoView - clone / Assembly sequencing status

Opossum: Chromosome 5 (TPF updated: 2007-03-15)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 XX-BVM151I14
Opossum_5ctg1
bVM151I14
EPN details

-
2 XX-BVM490C6
Opossum_5ctg1
bVM490C6
EPN details
CU915710.1
contiguous
3 XX-BVM223O16
Opossum_5ctg1
bVM223O16
EPN details
CU468641.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 99680 2 A CU915710.1 1 49680 +
99681 235909 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 CU468641.1 1 136229 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 XX-BVM151I14
Opossum_5ctg1
bVM151I14
EPN details
Project closed
05-SEP-08

-
- VMRC-18        
2 XX-BVM490C6
Opossum_5ctg1
bVM490C6
EPN details
Project closed
03-OCT-08
CU915710.1
contiguous
187694 VMRC-18 3' / 3'
49680 / 136229
2315 / -
136229
0.75
Identified
2008-08-02
find_overl...
humpub
 
3 XX-BVM223O16
Opossum_5ctg1
bVM223O16
EPN details
Submitted to EMBL
02-OCT-07
CU468641.1
finished
136229 VMRC-18        

Statistics

Clone Summary

Number of gaps
0
Total clones
3
Clone HTGS Phases
contiguous
1
finished
1
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
XX-BVM151I14 (bVM151I14)

Overlap Summary

Total overlap length of fin clones
0
Total finished length of fin clones w/ overlap
136,229
Total finished length of fin clones w/o overlap
136,229
Total overlap length of fin+unfin clones
136,229
Total finished length of fin+unfin clones w/ overlap
323,923
Total finished length of fin+unfin clones w/o overlap
187,694

Dovetails

# rank accession status length date
1 2 CU915710.1 unfinished 2,315 Sat, 25 Oct 2014 01:23

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/ya8gh8jw