ChromoView - clone / Assembly sequencing status

Mouse: Sub region MHC_BN_PATH (TPF updated: 2008-04-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP24-328K23
BNMHC_ctg17003
bN328K23
CU467497.6
finished
2 RP24-435H15
BNMHC_ctg17003
bN435H15
CU633441.6
finished
3 RP24-261A14
BNMHC_ctg17003
bN261A14
CU467496.5
finished
4 RP24-213F19
BNMHC_ctg17003
bN213F19
CU467495.3
finished
5 RP24-371C2
BNMHC_ctg17003
bN371C2
CU467498.4
finished
6 RP24-297C15
BNMHC_ctg17003
bN297C15
CU302416.11
finished
7 RP24-430J3
BNMHC_ctg17003
bN430J3
CU468282.23
finished
8 RP24-376D18
BNMHC_ctg17003
bN376D18
CU457785.10
finished
9 RP24-100B3
BNMHC_ctg17003
bN100B3
CT573030.3
finished
10 RP24-317H19
BNMHC_ctg17003
bN317H19
CT025759.14
finished
11 RP24-165L4
BNMHC_ctg17003
bN165L4
CU457802.6
finished
12 RP24-186I6
BNMHC_ctg17003
bN186I6
CU457784.5
finished
13 RP24-294P13
BNMHC_ctg17003
bN294P13
CU694282.6
finished
14 RP24-273L24
BNMHC_ctg17003
bN273L24
CU302430.14
finished
15 RP24-372N23
BNMHC_ctg17003
bN372N23
CU463841.14
finished
16 RP24-118O5
BNMHC_ctg17003
bN118O5
CU467494.10
finished
17 RP24-333H4
BNMHC_ctg17003
bN333H4
CU466549.6
finished
18 RP24-364D1
BNMHC_ctg17003
bN364D1
CU463829.12
finished
19 RP24-180B11
BNMHC_ctg17003
bN180B11
CR974451.9
finished
20 RP24-443D19
BNMHC_ctg17003
bN443D19
AC112970.18
finished
  GAP (type-2) length unknown    
22 RP24-345I17
BNMHC_ctg17003
bN345I17
CU463302.4
finished
23 RP24-66C9
BNMHC_ctg17003
bN66C9
CU634016.7
finished
24 RP24-120D11
BNMHC_ctg17003
bN120D11
CR974472.7
finished
25 RP24-76F6
BNMHC_ctg17003
bN76F6
CU463839.5
finished
26 RP24-332G24
BNMHC_ctg17003
bN332G24
CU463301.8
finished
27 RP24-335O11
BNMHC_ctg17003
bN335O11
CU463326.4
finished
  GAP (type-2) length unknown    
29 RP24-72K4
BNMHC_ctg17003
bN72K4
CU463305.9
finished
30 RP24-316L14
BNMHC_ctg17003
bN316L14
CR974567.10
finished
31 RP24-173D23
BNMHC_ctg17003
bN173D23
CU463852.10
finished
32 RP24-319N23
BNMHC_ctg17003
bN319N23
CR974427.5
finished
33 RP24-426H7
BNMHC_ctg17003
bN426H7
CU463836.8
finished
34 RP24-300M15
BNMHC_ctg17003
bN300M15
CU466305.7
finished
35 RP24-373I20
BNMHC_ctg17003
bN373I20
CU463304.3
finished
36 RP24-333E24
BNMHC_ctg17003
bN333E24
CU463332.3
finished
37 RP24-362D21
BNMHC_ctg17003
bN362D21
CU463303.4
finished
38 RP24-227B7
BNMHC_ctg17003
bN227B7
CU571156.2
unfinished
39 RP24-309G13
BNMHC_ctg17003
bN309G13
CU463835.6
finished
40 RP24-359O22
BNMHC_ctg17003
bN359O22
CU463840.5
finished
41 RP24-175P8
BNMHC_ctg17003
bN175P8
CU463300.5
finished
42 RP24-83C8
BNMHC_ctg17003
bN83C8
CU463306.6
finished
43 RP24-141I6
BNMHC_ctg17003
bN141I6
CU463299.6
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 181069 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467497.6 1 181069 +
181070 211109 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU633441.6 2001 32040 +
211110 377683 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467496.5 2001 168574 +
377684 418652 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467495.3 2001 42969 +
418653 436699 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467498.4 2001 20047 +
436700 594857 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU302416.11 2001 160158 +
594858 632279 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU468282.23 2001 39422 +
632280 759991 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU457785.10 2001 129712 +
759992 962612 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CT573030.3 26011 228631 +
962613 1039632 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CT025759.14 94663 171682 +
1039633 1047738 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU457802.6 2001 10106 +
1047739 1209372 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU457784.5 2001 163634 +
1209373 1275716 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU694282.6 2001 68344 +
1275717 1392301 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU302430.14 59857 176441 -
1392302 1471499 15 F CU463841.14
Double 3-prime join to 'CU463841.14'
1 79198 +
1471500 1476499 16 N 5000 Bad overlap - double 3 prime join    
1476500 1674287 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CU467494.10 2001 199788 +
1674288 1678067 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CU466549.6 1 3780 +
1678068 1831258 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CU463829.12 2001 155191 +
1831259 2018131 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CR974451.9 2001 188873 +
2018132 2103602 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 AC112970.18 1 85471 -
2103603 2153602 22 N 50000 contig yes
2153603 2304536 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463302.4 1 150934 +
2304537 2429146 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU634016.7 2001 126610 +
2429147 2619231 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CR974472.7 2001 192085 +
2619232 2706295 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463839.5 2001 89064 +
2706296 2760126 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463301.8 2001 55831 +
2760127 2911533 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463326.4 2001 153407 +
2911534 2961533 29 N 50000 contig yes
2961534 3129726 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463305.9 1 168193 +
3129727 3316652 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CR974567.10 2001 188926 +
3316653 3407772 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463852.10 2001 93120 +
3407773 3586167 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CR974427.5 2001 180395 +
3586168 3696179 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463836.8 2001 112012 +
3696180 3855337 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU466305.7 2001 161158 +
3855338 3906714 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463304.3 30020 81396 +
3906715 4098769 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463332.3 2001 194055 +
4098770 4163831 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463303.4 2001 67062 +
4163832 4213831 39 N 50000 clone yes
4213832 4239667 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463835.6 1 25836 -
4239668 4402912 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463840.5 2001 165245 +
4402913 4548373 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463300.5 2001 147461 +
4548374 4725789 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463306.6 2001 179416 +
4725790 4790693 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463299.6 2001 66904 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
41
Clone HTGS Phases
finished
40
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
301,232
Total finished length of fin clones w/ overlap
4,995,503
Total finished length of fin clones w/o overlap
4,694,271
Total overlap length of fin+unfin clones
302,211
Total finished length of fin+unfin clones w/ overlap
5,208,687
Total finished length of fin+unfin clones w/o overlap
4,906,476

Dovetails

# rank accession status length date
1 14 CU302430.14 unfinished 59,856 Wed, 29 Jul 2015 00:44
2 37 CU463303.4 unfinished 217 Wed, 29 Jul 2015 00:44
3 38 CU571156.2 unfinished 35,066 Wed, 29 Jul 2015 00:44
4 38 CU571156.2 unfinished 60,533 Wed, 29 Jul 2015 00:44
5 39 CU463835.6 unfinished 3,774 Wed, 29 Jul 2015 00:44

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Other links

* quick link - http://q.sanger.ac.uk/f190fj3f