ChromoView - clone / Assembly sequencing status

Mouse: Sub region MHC_BN_PATH (TPF updated: 2008-04-04)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP24-328K23
BNMHC_ctg17003
bN328K23
EPN details
CU467497.6
finished
2 RP24-435H15
BNMHC_ctg17003
bN435H15
EPN details
CU633441.6
finished
3 RP24-261A14
BNMHC_ctg17003
bN261A14
EPN details
CU467496.5
finished
4 RP24-213F19
BNMHC_ctg17003
bN213F19
EPN details
CU467495.3
finished
5 RP24-371C2
BNMHC_ctg17003
bN371C2
EPN details
CU467498.4
finished
6 RP24-297C15
BNMHC_ctg17003
bN297C15
EPN details
CU302416.11
finished
7 RP24-430J3
BNMHC_ctg17003
bN430J3
EPN details
CU468282.23
finished
8 RP24-376D18
BNMHC_ctg17003
bN376D18
EPN details
CU457785.10
finished
9 RP24-100B3
BNMHC_ctg17003
bN100B3
EPN details
CT573030.3
finished
10 RP24-317H19
BNMHC_ctg17003
bN317H19
EPN details
CT025759.14
finished
11 RP24-165L4
BNMHC_ctg17003
bN165L4
EPN details
CU457802.6
finished
12 RP24-186I6
BNMHC_ctg17003
bN186I6
EPN details
CU457784.5
finished
13 RP24-294P13
BNMHC_ctg17003
bN294P13
EPN details
CU694282.6
finished
14 RP24-273L24
BNMHC_ctg17003
bN273L24
EPN details
CU302430.14
finished
15 RP24-372N23
BNMHC_ctg17003
bN372N23
EPN details
CU463841.14
finished
16 RP24-118O5
BNMHC_ctg17003
bN118O5
EPN details
CU467494.10
finished
17 RP24-333H4
BNMHC_ctg17003
bN333H4
EPN details
CU466549.6
finished
18 RP24-364D1
BNMHC_ctg17003
bN364D1
EPN details
CU463829.12
finished
19 RP24-180B11
BNMHC_ctg17003
bN180B11
EPN details
CR974451.9
finished
20 RP24-443D19
BNMHC_ctg17003
bN443D19
AC112970.18
finished
  GAP (type-2) length unknown    
22 RP24-345I17
BNMHC_ctg17003
bN345I17
EPN details
CU463302.4
finished
23 RP24-66C9
BNMHC_ctg17003
bN66C9
EPN details
CU634016.7
finished
24 RP24-120D11
BNMHC_ctg17003
bN120D11
EPN details
CR974472.7
finished
25 RP24-76F6
BNMHC_ctg17003
bN76F6
EPN details
CU463839.5
finished
26 RP24-332G24
BNMHC_ctg17003
bN332G24
EPN details
CU463301.8
finished
27 RP24-335O11
BNMHC_ctg17003
bN335O11
EPN details
CU463326.4
finished
  GAP (type-2) length unknown    
29 RP24-72K4
BNMHC_ctg17003
bN72K4
EPN details
CU463305.9
finished
30 RP24-316L14
BNMHC_ctg17003
bN316L14
EPN details
CR974567.10
finished
31 RP24-173D23
BNMHC_ctg17003
bN173D23
EPN details
CU463852.10
finished
32 RP24-319N23
BNMHC_ctg17003
bN319N23
EPN details
CR974427.5
finished
33 RP24-426H7
BNMHC_ctg17003
bN426H7
EPN details
CU463836.8
finished
34 RP24-300M15
BNMHC_ctg17003
bN300M15
EPN details
CU466305.7
finished
35 RP24-373I20
BNMHC_ctg17003
bN373I20
EPN details
CU463304.3
finished
36 RP24-333E24
BNMHC_ctg17003
bN333E24
EPN details
CU463332.3
finished
37 RP24-362D21
BNMHC_ctg17003
bN362D21
EPN details
CU463303.4
finished
38 RP24-227B7
BNMHC_ctg17003
bN227B7
EPN details
CU571156.2
unfinished
39 RP24-309G13
BNMHC_ctg17003
bN309G13
EPN details
CU463835.6
finished
40 RP24-359O22
BNMHC_ctg17003
bN359O22
EPN details
CU463840.5
finished
41 RP24-175P8
BNMHC_ctg17003
bN175P8
EPN details
CU463300.5
finished
42 RP24-83C8
BNMHC_ctg17003
bN83C8
EPN details
CU463306.6
finished
43 RP24-141I6
BNMHC_ctg17003
bN141I6
EPN details
CU463299.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 181069 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467497.6 1 181069 +
181070 211109 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU633441.6 2001 32040 +
211110 377683 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467496.5 2001 168574 +
377684 418652 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467495.3 2001 42969 +
418653 436699 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU467498.4 2001 20047 +
436700 594857 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU302416.11 2001 160158 +
594858 632279 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU468282.23 2001 39422 +
632280 759991 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU457785.10 2001 129712 +
759992 962612 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CT573030.3 26011 228631 +
962613 1039632 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CT025759.14 94663 171682 +
1039633 1047738 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU457802.6 2001 10106 +
1047739 1209372 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU457784.5 2001 163634 +
1209373 1275716 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU694282.6 2001 68344 +
1275717 1392301 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 14 CU302430.14 59857 176441 -
1392302 1471499 15 F CU463841.14
Double 3-prime join to 'CU463841.14'
1 79198 +
1471500 1476499 16 N 5000 Bad overlap - double 3 prime join    
1476500 1674287 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CU467494.10 2001 199788 +
1674288 1678067 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CU466549.6 1 3780 +
1678068 1831258 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CU463829.12 2001 155191 +
1831259 2018131 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 CR974451.9 2001 188873 +
2018132 2103602 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 21 AC112970.18 1 85471 -
2103603 2153602 22 N 50000 contig yes
2153603 2304536 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463302.4 1 150934 +
2304537 2429146 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU634016.7 2001 126610 +
2429147 2619231 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CR974472.7 2001 192085 +
2619232 2706295 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463839.5 2001 89064 +
2706296 2760126 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463301.8 2001 55831 +
2760127 2911533 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 28 CU463326.4 2001 153407 +
2911534 2961533 29 N 50000 contig yes
2961534 3129726 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463305.9 1 168193 +
3129727 3316652 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CR974567.10 2001 188926 +
3316653 3407772 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463852.10 2001 93120 +
3407773 3586167 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CR974427.5 2001 180395 +
3586168 3696179 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463836.8 2001 112012 +
3696180 3855337 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU466305.7 2001 161158 +
3855338 3906714 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463304.3 30020 81396 +
3906715 4098769 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463332.3 2001 194055 +
4098770 4163831 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 38 CU463303.4 2001 67062 +
4163832 4213831 39 N 50000 clone yes
4213832 4239667 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463835.6 1 25836 -
4239668 4402912 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463840.5 2001 165245 +
4402913 4548373 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463300.5 2001 147461 +
4548374 4725789 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463306.6 2001 179416 +
4725790 4790693 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 44 CU463299.6 2001 66904 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP24-328K23
BNMHC_ctg17003
bN328K23
EPN details
Analysed
13-NOV-07
CU467497.6
finished
181069 RPCI-24 3' / 5'
181069 / 2001
- / -
2000
0
Identified
2008-04-04
find_overl...
humpub
 
2 RP24-435H15
BNMHC_ctg17003
bN435H15
EPN details
Analysed
29-MAR-08
CU633441.6
finished
32040 RPCI-24 3' / 5'
32040 / 2001
- / -
2000
0
Identified
2008-04-04
find_overl...
humpub
 
3 RP24-261A14
BNMHC_ctg17003
bN261A14
EPN details
Analysed
25-SEP-07
CU467496.5
finished
168574 RPCI-24 3' / 5'
168574 / 2001
- / -
2000
0
Identified
2007-10-03
find_overl...
humpub
 
4 RP24-213F19
BNMHC_ctg17003
bN213F19
EPN details
Analysed
20-SEP-07
CU467495.3
finished
42969 RPCI-24 3' / 5'
42969 / 2001
- / -
2000
0
Identified
2007-09-24
find_overl...
ck1
 
5 RP24-371C2
BNMHC_ctg17003
bN371C2
EPN details
Analysed
18-SEP-07
CU467498.4
finished
20047 RPCI-24 3' / 5'
20047 / 2001
- / -
2000
0
Identified
2007-10-03
find_overl...
humpub
 
6 RP24-297C15
BNMHC_ctg17003
bN297C15
EPN details
Analysed
29-SEP-07
CU302416.11
finished
160158 RPCI-24 3' / 5'
160158 / 2001
- / -
2000
0
Identified
2009-03-06
find_overl...
humpub
 
7 RP24-430J3
BNMHC_ctg17003
bN430J3
EPN details
Analysed
06-MAR-09
CU468282.23
finished
39422 RPCI-24 3' / 5'
39422 / 2001
- / -
2000
0
Identified
2009-03-06
find_overl...
humpub
 
8 RP24-376D18
BNMHC_ctg17003
bN376D18
EPN details
Analysed
29-SEP-07
CU457785.10
finished
129712 RPCI-24 3' / 5'
129712 / 26011
- / -
26010
0
Identified
2014-04-16
find_overl...
humpub
 
9 RP24-100B3
BNMHC_ctg17003
bN100B3
EPN details
Analysed
15-APR-14
CT573030.3
finished
228631 RPCI-24 3' / 5'
228631 / 94663
- / -
94661
0
Identified
2014-11-12
find_overl...
humpub
 
10 RP24-317H19
BNMHC_ctg17003
bN317H19
EPN details
Submitted to EMBL
13-JAN-09
CT025759.14
finished
171682 RPCI-24 3' / 5'
171682 / 2001
- / -
2002
0.1
Identified
2007-10-11
find_overl...
humpub
 
11 RP24-165L4
BNMHC_ctg17003
bN165L4
EPN details
Analysed
06-OCT-07
CU457802.6
finished
10106 RPCI-24 3' / 5'
10106 / 2001
- / -
2000
0
Identified
2007-10-11
find_overl...
humpub
 
12 RP24-186I6
BNMHC_ctg17003
bN186I6
EPN details
Analysed
17-AUG-07
CU457784.5
finished
163634 RPCI-24 3' / 5'
163634 / 2001
- / -
2000
0
Identified
2008-05-13
find_overl...
humpub
 
13 RP24-294P13
BNMHC_ctg17003
bN294P13
EPN details
Analysed
13-MAY-08
CU694282.6
finished
68344 RPCI-24 3' / 3'
68344 / 176441
- / -
2000
0
Identified
2008-05-13
find_overl...
humpub
 
14 RP24-273L24
BNMHC_ctg17003
bN273L24
EPN details
Analysed
25-SEP-07
CU302430.14
finished
178441 RPCI-24 5' / 3'
59857 / 77935
59856 / -
1264
8.77
Identified
2008-04-04
find_overl...
humpub
 
15 RP24-372N23
BNMHC_ctg17003
bN372N23
EPN details
Analysed
14-FEB-08
CU463841.14
finished
79198 RPCI-24 3' / 5'
79198 / 2001
- / -
2000
0
Identified
2008-04-04
find_overl...
humpub
 
16 RP24-118O5
BNMHC_ctg17003
bN118O5
EPN details
Analysed
01-FEB-08
CU467494.10
finished
201775 RPCI-24 3' / 5'
199788 / 1
- / -
2000
3.17
Identified
2008-02-01
find_overl...
humpub
 
17 RP24-333H4
BNMHC_ctg17003
bN333H4
EPN details
Analysed
09-NOV-07
CU466549.6
finished
3780 RPCI-24 3' / 5'
3780 / 2001
- / -
2000
0
Identified
2007-12-12
find_overl...
humpub
 
18 RP24-364D1
BNMHC_ctg17003
bN364D1
EPN details
Analysed
12-DEC-07
CU463829.12
finished
155191 RPCI-24 3' / 5'
155191 / 2001
- / -
2000
0
Identified
2007-12-12
find_overl...
humpub
 
19 RP24-180B11
BNMHC_ctg17003
bN180B11
EPN details
Submitted to EMBL
13-JAN-09
CR974451.9
finished
188873 RPCI-24 3' / 3'
188873 / 85471
- / -
87276
0.15
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
20 RP24-443D19
BNMHC_ctg17003
bN443D19
-
-
AC112970.18
finished
172747 RPCI-24        
  GAP (type-2) length unknown                  
22 RP24-345I17
BNMHC_ctg17003
bN345I17
EPN details
Analysed
10-OCT-07
CU463302.4
finished
150934 RPCI-24 3' / 5'
150934 / 2001
- / -
2000
0
Identified
2008-05-21
find_overl...
humpub
 
23 RP24-66C9
BNMHC_ctg17003
bN66C9
EPN details
Analysed
21-MAY-08
CU634016.7
finished
126610 RPCI-24 3' / 5'
126610 / 2001
- / -
2000
0
Identified
2008-05-21
find_overl...
humpub
 
24 RP24-120D11
BNMHC_ctg17003
bN120D11
EPN details
Submitted to EMBL
13-JAN-09
CR974472.7
finished
192085 RPCI-24 3' / 5'
192085 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
25 RP24-76F6
BNMHC_ctg17003
bN76F6
EPN details
Analysed
14-AUG-07
CU463839.5
finished
89064 RPCI-24 3' / 5'
89064 / 2001
- / -
2000
0
Identified
2007-10-12
find_overl...
humpub
 
26 RP24-332G24
BNMHC_ctg17003
bN332G24
EPN details
Analysed
04-OCT-07
CU463301.8
finished
55831 RPCI-24 3' / 5'
55831 / 2001
- / -
2000
0
Identified
2007-10-12
find_overl...
humpub
 
27 RP24-335O11
BNMHC_ctg17003
bN335O11
EPN details
Analysed
24-AUG-07
CU463326.4
finished
153407 RPCI-24        
  GAP (type-2) length unknown                  
29 RP24-72K4
BNMHC_ctg17003
bN72K4
EPN details
Analysed
07-SEP-07
CU463305.9
finished
168193 RPCI-24 3' / 5'
168193 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
30 RP24-316L14
BNMHC_ctg17003
bN316L14
EPN details
Submitted to EMBL
13-JAN-09
CR974567.10
finished
188926 RPCI-24 3' / 5'
188926 / 2001
- / -
2000
0
Identified
2007-11-28
find_overl...
humpub
 
31 RP24-173D23
BNMHC_ctg17003
bN173D23
EPN details
Analysed
28-NOV-07
CU463852.10
finished
93120 RPCI-24 3' / 5'
93120 / 2001
- / -
2000
0
Identified
2008-04-04
find_overl...
humpub
 
32 RP24-319N23
BNMHC_ctg17003
bN319N23
EPN details
Submitted to EMBL
13-JAN-09
CR974427.5
finished
180395 RPCI-24 3' / 5'
180395 / 2001
- / -
2000
0
Identified
2007-11-13
find_overl...
humpub
 
33 RP24-426H7
BNMHC_ctg17003
bN426H7
EPN details
Analysed
13-NOV-07
CU463836.8
finished
112012 RPCI-24 3' / 5'
112012 / 2001
- / -
2000
0
Identified
2007-12-13
find_overl...
humpub
 
34 RP24-300M15
BNMHC_ctg17003
bN300M15
EPN details
Analysed
21-DEC-07
CU466305.7
finished
161158 RPCI-24 3' / 5'
161158 / 30020
- / -
30019
0
Identified
2008-04-04
find_overl...
humpub
 
35 RP24-373I20
BNMHC_ctg17003
bN373I20
EPN details
Analysed
24-AUG-07
CU463304.3
finished
81396 RPCI-24 3' / 5'
81396 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
36 RP24-333E24
BNMHC_ctg17003
bN333E24
EPN details
Analysed
31-AUG-07
CU463332.3
finished
194055 RPCI-24 3' / 5'
194055 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
37 RP24-362D21
BNMHC_ctg17003
bN362D21
EPN details
Analysed
07-SEP-07
CU463303.4
finished
67062 RPCI-24 3' / 5'
66845 / 35132
217 / 35066
65
4.62
Identified
2008-06-03
find_overl...
humpub
 
38 RP24-227B7
BNMHC_ctg17003
bN227B7
EPN details
Cancelled
09-JUN-09
CU571156.2
unfinished
213184 RPCI-24 5' / 5'
60534 / 4685
60533 / 3774
914
3.28
Identified
2008-06-03
find_overl...
humpub
 
39 RP24-309G13
BNMHC_ctg17003
bN309G13
EPN details
Analysed
28-SEP-07
CU463835.6
finished
25836 RPCI-24 5' / 5'
1 / 2001
- / -
2000
0
Identified
2007-09-28
find_overl...
humpub
 
40 RP24-359O22
BNMHC_ctg17003
bN359O22
EPN details
Analysed
04-SEP-07
CU463840.5
finished
165245 RPCI-24 3' / 5'
165245 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
41 RP24-175P8
BNMHC_ctg17003
bN175P8
EPN details
Analysed
14-AUG-07
CU463300.5
finished
147461 RPCI-24 3' / 5'
147461 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
42 RP24-83C8
BNMHC_ctg17003
bN83C8
EPN details
Analysed
08-SEP-07
CU463306.6
finished
179416 RPCI-24 3' / 5'
179416 / 2001
- / -
2000
0
Identified
2007-09-27
find_overl...
humpub
 
43 RP24-141I6
BNMHC_ctg17003
bN141I6
EPN details
Analysed
19-JUL-07
CU463299.6
finished
66904 RPCI-24        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
41
Clone HTGS Phases
finished
40
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
301,232
Total finished length of fin clones w/ overlap
4,995,503
Total finished length of fin clones w/o overlap
4,694,271
Total overlap length of fin+unfin clones
302,211
Total finished length of fin+unfin clones w/ overlap
5,208,687
Total finished length of fin+unfin clones w/o overlap
4,906,476

Dovetails

# rank accession status length date
1 14 CU302430.14 unfinished 59,856 Sun, 21 Dec 2014 00:26
2 37 CU463303.4 unfinished 217 Sun, 21 Dec 2014 00:26
3 38 CU571156.2 unfinished 35,066 Sun, 21 Dec 2014 00:26
4 38 CU571156.2 unfinished 60,533 Sun, 21 Dec 2014 00:26
5 39 CU463835.6 unfinished 3,774 Sun, 21 Dec 2014 00:26

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Other links

* quick link - http://q.sanger.ac.uk/f190fj3f