ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD9.1M (TPF updated: 2007-01-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-243F22
chr4_NOD_IDD9.1M
bQ243F22
EPN details

-
2 DN-96O10
chr4_NOD_IDD9.1M
bQ96O10
EPN details
CU459015.8
finished
3 DN-230B7
chr4_NOD_IDD9.1M
bQ230B7
EPN details
CU459014.9
finished
4 DN-255M3
chr4_NOD_IDD9.1M
bQ255M3
EPN details

-

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 50000 1 N 50000 clone no
50001 253314 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 2 - 3 CU459015.8 1 203314 +
253315 265601 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 2 - 3 CU459014.9 183003 195289 +
265602 315601 4 N 50000 clone no

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-243F22
chr4_NOD_IDD9.1M
bQ243F22
EPN details
Cancelled
16-MAR-07

-
- DIL NOD        
2 DN-96O10
chr4_NOD_IDD9.1M
bQ96O10
EPN details
Submitted to EMBL
01-MAY-08
CU459015.8
finished
203314 DIL NOD 3' / 5'
203314 / 183003
- / -
182911
0.05
Identified
2014-07-29
fetch_ncbi...
humpub
 
3 DN-230B7
chr4_NOD_IDD9.1M
bQ230B7
EPN details
Submitted to EMBL
13-JAN-09
CU459014.9
finished
195289 DIL NOD        
4 DN-255M3
chr4_NOD_IDD9.1M
bQ255M3
EPN details
Cancelled
16-MAR-07

-
- DIL NOD        

Statistics

Clone Summary

Number of gaps
0
Total clones
4
Clone HTGS Phases
finished
2
Number of clones w/o accession
2
Clones w/o htgs phase
2
Non-htgs clonenames
DN-243F22 (bQ243F22), DN-255M3 (bQ255M3)

Overlap Summary

Total overlap length of fin clones
182,911
Total finished length of fin clones w/ overlap
398,603
Total finished length of fin clones w/o overlap
215,692
Total overlap length of fin+unfin clones
182,911
Total finished length of fin+unfin clones w/ overlap
398,603
Total finished length of fin+unfin clones w/o overlap
215,692

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Other links

* quick link - http://q.sanger.ac.uk/t44zcasn