ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD10.1 (TPF updated: 2008-10-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-240H8
chr3_NOD_IDD10.1
bQ240H8
EPN details
AL645985.30
finished
  GAP (type-2) length unknown    
3 DN-84L11
chr3_NOD_IDD10.1
bQ84L11
EPN details
AL669919.11
finished
  GAP (type-2) length unknown    
5 DN-384L23
chr3_NOD_IDD10.1
bQ384L23
EPN details
AL663099.7
finished
6 DN-461G22
chr3_NOD_IDD10.1
bQ461G22
EPN details
AL669922.5
finished
7 DN-70D7
chr3_NOD_IDD10.1
bQ70D7
EPN details
AL669933.6
finished
8 DN-262D11
chr3_NOD_IDD10.1
bQ262D11
EPN details
AL645760.15
finished
9 DN-340J1
chr3_NOD_IDD10.1
bQ340J1
EPN details
AL645757.13
finished
  GAP (type-2) length unknown    
11 DN-358O3
chr3_NOD_IDD10.1
bQ358O3
EPN details
AL669937.11
finished
12 DN-322E23
chr3_NOD_IDD10.1
bQ322E23
EPN details
AL672281.18
finished
13 DN-127L1
chr3_NOD_IDD10.1
bQ127L1
EPN details
AL672260.25
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 141661 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AL645985.30 1 141661 +
141662 191661 2 N 50000 contig yes
191662 334002 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 3 AL669919.11 1 142341 +
334003 384002 4 N 50000 contig yes
384003 561137 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL663099.7 1 177135 +
561138 567784 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL669922.5 2001 8647 +
567785 627597 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL669933.6 2001 61813 +
627598 761422 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL645760.15 2001 135825 +
761423 893462 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 9 AL645757.13 2001 134040 +
893463 943462 10 N 50000 contig yes
943463 1107136 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL669937.11 1 163674 +
1107137 1178656 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL672281.18 2001 73520 +
1178657 1345666 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 13 AL672260.25 2001 169010 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-240H8
chr3_NOD_IDD10.1
bQ240H8
EPN details
Submitted to EMBL
13-JAN-09
AL645985.30
finished
141661 DIL NOD        
  GAP (type-2) length unknown                  
3 DN-84L11
chr3_NOD_IDD10.1
bQ84L11
EPN details
Submitted to EMBL
13-JAN-09
AL669919.11
finished
142341 DIL NOD        
  GAP (type-2) length unknown                  
5 DN-384L23
chr3_NOD_IDD10.1
bQ384L23
EPN details
Submitted to EMBL
13-JAN-09
AL663099.7
finished
177135 DIL NOD 3' / 5'
177135 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
6 DN-461G22
chr3_NOD_IDD10.1
bQ461G22
EPN details
Submitted to EMBL
13-JAN-09
AL669922.5
finished
8647 DIL NOD 3' / 5'
8647 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
7 DN-70D7
chr3_NOD_IDD10.1
bQ70D7
EPN details
Submitted to EMBL
13-JAN-09
AL669933.6
finished
61813 DIL NOD 3' / 5'
61813 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
8 DN-262D11
chr3_NOD_IDD10.1
bQ262D11
EPN details
Submitted to EMBL
13-JAN-09
AL645760.15
finished
135825 DIL NOD 3' / 5'
135825 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
9 DN-340J1
chr3_NOD_IDD10.1
bQ340J1
EPN details
Submitted to EMBL
13-JAN-09
AL645757.13
finished
134040 DIL NOD        
  GAP (type-2) length unknown                  
11 DN-358O3
chr3_NOD_IDD10.1
bQ358O3
EPN details
Submitted to EMBL
13-JAN-09
AL669937.11
finished
163674 DIL NOD 3' / 5'
163674 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
12 DN-322E23
chr3_NOD_IDD10.1
bQ322E23
EPN details
Submitted to EMBL
13-JAN-09
AL672281.18
finished
73520 DIL NOD 3' / 5'
73520 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
13 DN-127L1
chr3_NOD_IDD10.1
bQ127L1
EPN details
Submitted to EMBL
13-JAN-09
AL672260.25
finished
169010 DIL NOD        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-2
3
Total clones
10
Clone HTGS Phases
finished
10
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
12,000
Total finished length of fin clones w/ overlap
1,207,666
Total finished length of fin clones w/o overlap
1,195,666
Total overlap length of fin+unfin clones
12,000
Total finished length of fin+unfin clones w/ overlap
1,207,666
Total finished length of fin+unfin clones w/o overlap
1,195,666

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Other links

* quick link - http://q.sanger.ac.uk/8o61c38a