ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD3.1 (TPF updated: 2008-10-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-144H19
chr3_NOD_IDD3.1
bQ144H19
EPN details
AL645966.30
finished
2 DN-452A22
chr3_NOD_IDD3.1
bQ452A22
EPN details
AL645982.26
finished
  GAP (type-2) length unknown    
4 DN-25M4
chr3_NOD_IDD3.1
bQ25M4
EPN details
AL645968.6
finished
  GAP (type-2) length unknown    
6 DN-316O2
chr3_NOD_IDD3.1
bQ316O2
EPN details
AL772247.19
finished
7 DN-258M5
chr3_NOD_IDD3.1
bQ258M5
EPN details
AL645970.15
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 161393 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645966.30 1 161393 +
161394 292416 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AL645982.26 2001 133023 +
292417 342416 3 N 50000 contig yes
342417 504237 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 AL645968.6 1 161821 +
504238 554237 5 N 50000 contig yes
554238 658443 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL772247.19 1 104206 +
658444 797603 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 AL645970.15 2001 141160 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-144H19
chr3_NOD_IDD3.1
bQ144H19
EPN details
Submitted to EMBL
13-JAN-09
AL645966.30
finished
161393 DIL NOD 3' / 5'
161393 / 2001
- / -
2000
0
Identified
2014-10-29
fetch_ncbi...
humpub
 
2 DN-452A22
chr3_NOD_IDD3.1
bQ452A22
EPN details
Submitted to EMBL
13-JAN-09
AL645982.26
finished
133023 DIL NOD        
  GAP (type-2) length unknown                  
4 DN-25M4
chr3_NOD_IDD3.1
bQ25M4
EPN details
Submitted to EMBL
13-JAN-09
AL645968.6
finished
161821 DIL NOD        
  GAP (type-2) length unknown                  
6 DN-316O2
chr3_NOD_IDD3.1
bQ316O2
EPN details
Submitted to EMBL
13-JAN-09
AL772247.19
finished
104206 DIL NOD 3' / 5'
104206 / 2001
- / -
2000
0
Identified
2014-10-29
fetch_ncbi...
humpub
 
7 DN-258M5
chr3_NOD_IDD3.1
bQ258M5
EPN details
Submitted to EMBL
13-JAN-09
AL645970.15
finished
141160 DIL NOD        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
5
Clone HTGS Phases
finished
5
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
4,000
Total finished length of fin clones w/ overlap
701,603
Total finished length of fin clones w/o overlap
697,603
Total overlap length of fin+unfin clones
4,000
Total finished length of fin+unfin clones w/ overlap
701,603
Total finished length of fin+unfin clones w/o overlap
697,603

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Other links

* quick link - http://q.sanger.ac.uk/5hxqu6tc