ChromoView - clone / Assembly sequencing status

Mouse: Sub region CHO_IDD4.2Q (TPF updated: 2007-03-19)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH29-187G15
chr11_CHORI29_IDD4.2Q
bCN187G15
EPN details
CU407131.8
finished
2 CH29-595B18
chr11_CHORI29_IDD4.2Q
bCN595B18
EPN details
CU468043.5
finished
3 CH29-63I6
chr11_CHORI29_IDD4.2Q
bCN63I6
EPN details
CU406989.5
finished
4 CH29-624A16
chr11_CHORI29_IDD4.2Q
bCN624A16
EPN details
CU406969.5
finished
5 CH29-482F3
chr11_CHORI29_IDD4.2Q
bCN482F3
EPN details
CU406988.6
finished
6 CH29-44K18
chr11_CHORI29_IDD4.2Q
bCN44K18
EPN details
CU393486.7
finished
7 CH29-75G18
chr11_CHORI29_IDD4.2Q
bCN75G18
EPN details
CU407108.18
finished
8 CH29-148F13
chr11_CHORI29_IDD4.2Q
bCN148F13
EPN details
CU406964.19
finished
9 CH29-166B6
chr11_CHORI29_IDD4.2Q
bCN166B6
EPN details
CU442701.7
finished
10 CH29-34I2
chr11_CHORI29_IDD4.2Q
bCN34I2
EPN details
CU406967.7
finished
11 CH29-114N8
chr11_CHORI29_IDD4.2Q
bCN114N8
EPN details
CU405628.17
finished
12 CH29-540H16
chr11_CHORI29_IDD4.2Q
bCN540H16
EPN details
CU407332.8
finished
13 CH29-519H15
chr11_CHORI29_IDD4.2Q
bCN519H15
EPN details
CU407331.10
finished
14 CH29-28O16
chr11_CHORI29_IDD4.2Q
bCN28O16
EPN details
CU424437.12
finished
15 CH29-115E8
chr11_CHORI29_IDD4.2Q
bCN115E8
EPN details
CU392839.9
finished
16 CH29-112D22
chr11_CHORI29_IDD4.2Q
bCN112D22
EPN details
CU406959.5
finished
17 CH29-493D13
chr11_CHORI29_IDD4.2Q
bCN493D13
EPN details
CU406968.7
finished
18 CH29-16C17
chr11_CHORI29_IDD4.2Q
bCN16C17
EPN details
CU442702.10
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 233513 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU407131.8 1 233513 -
233514 310347 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU468043.5 2001 78834 +
310348 519361 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406989.5 2001 211014 +
519362 667802 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406969.5 2001 150441 +
667803 720761 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406988.6 2001 54959 +
720762 974422 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU393486.7 2001 255661 +
974423 1186104 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU407108.18 2001 213682 +
1186105 1428310 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406964.19 2001 244206 +
1428311 1546092 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU442701.7 2001 119782 +
1546093 1802236 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406967.7 2001 258144 +
1802237 1952491 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU405628.17 2001 152255 +
1952492 2061887 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU407332.8 2001 111396 +
2061888 2187286 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU407331.10 2001 127399 +
2187287 2398784 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU424437.12 2001 213498 +
2398785 2616726 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU392839.9 2001 219942 +
2616727 2812444 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406959.5 2001 197718 +
2812445 2944697 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU406968.7 2001 134253 +
2944698 3086744 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 18 CU442702.10 2001 144047 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH29-187G15
chr11_CHORI29_IDD4.2Q
bCN187G15
EPN details
Submitted to EMBL
13-JAN-09
CU407131.8
finished
233513 CHORI-29 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
2 CH29-595B18
chr11_CHORI29_IDD4.2Q
bCN595B18
EPN details
Submitted to EMBL
13-JAN-09
CU468043.5
finished
78834 CHORI-29 3' / 5'
78834 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
3 CH29-63I6
chr11_CHORI29_IDD4.2Q
bCN63I6
EPN details
Submitted to EMBL
13-JAN-09
CU406989.5
finished
211014 CHORI-29 3' / 5'
211014 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
4 CH29-624A16
chr11_CHORI29_IDD4.2Q
bCN624A16
EPN details
Submitted to EMBL
13-JAN-09
CU406969.5
finished
150441 CHORI-29 3' / 5'
150441 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
5 CH29-482F3
chr11_CHORI29_IDD4.2Q
bCN482F3
EPN details
Submitted to EMBL
13-JAN-09
CU406988.6
finished
54959 CHORI-29 3' / 5'
54959 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
6 CH29-44K18
chr11_CHORI29_IDD4.2Q
bCN44K18
EPN details
Submitted to EMBL
13-JAN-09
CU393486.7
finished
255661 CHORI-29 3' / 5'
255661 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
7 CH29-75G18
chr11_CHORI29_IDD4.2Q
bCN75G18
EPN details
Submitted to EMBL
13-JAN-09
CU407108.18
finished
213682 CHORI-29 3' / 5'
213682 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
8 CH29-148F13
chr11_CHORI29_IDD4.2Q
bCN148F13
EPN details
Submitted to EMBL
13-JAN-09
CU406964.19
finished
244206 CHORI-29 3' / 5'
244206 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
9 CH29-166B6
chr11_CHORI29_IDD4.2Q
bCN166B6
EPN details
Submitted to EMBL
13-JAN-09
CU442701.7
finished
119782 CHORI-29 3' / 5'
119782 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
10 CH29-34I2
chr11_CHORI29_IDD4.2Q
bCN34I2
EPN details
Submitted to EMBL
13-JAN-09
CU406967.7
finished
258144 CHORI-29 3' / 5'
258144 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
11 CH29-114N8
chr11_CHORI29_IDD4.2Q
bCN114N8
EPN details
Submitted to EMBL
13-JAN-09
CU405628.17
finished
152255 CHORI-29 3' / 5'
152255 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
12 CH29-540H16
chr11_CHORI29_IDD4.2Q
bCN540H16
EPN details
Submitted to EMBL
13-JAN-09
CU407332.8
finished
111396 CHORI-29 3' / 5'
111396 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
13 CH29-519H15
chr11_CHORI29_IDD4.2Q
bCN519H15
EPN details
Submitted to EMBL
13-JAN-09
CU407331.10
finished
127399 CHORI-29 3' / 5'
127399 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
14 CH29-28O16
chr11_CHORI29_IDD4.2Q
bCN28O16
EPN details
Submitted to EMBL
13-JAN-09
CU424437.12
finished
213498 CHORI-29 3' / 5'
213498 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
15 CH29-115E8
chr11_CHORI29_IDD4.2Q
bCN115E8
EPN details
Submitted to EMBL
13-JAN-09
CU392839.9
finished
219942 CHORI-29 3' / 5'
219942 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
16 CH29-112D22
chr11_CHORI29_IDD4.2Q
bCN112D22
EPN details
Submitted to EMBL
13-JAN-09
CU406959.5
finished
197718 CHORI-29 3' / 5'
197718 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
17 CH29-493D13
chr11_CHORI29_IDD4.2Q
bCN493D13
EPN details
Submitted to EMBL
13-JAN-09
CU406968.7
finished
134253 CHORI-29 3' / 5'
134253 / 2001
- / -
2000
0
Identified
2014-10-31
fetch_ncbi...
humpub
 
18 CH29-16C17
chr11_CHORI29_IDD4.2Q
bCN16C17
EPN details
Submitted to EMBL
13-JAN-09
CU442702.10
finished
144047 CHORI-29        

Statistics

Clone Summary

Number of gaps
0
Total clones
18
Clone HTGS Phases
finished
18
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
34,000
Total finished length of fin clones w/ overlap
3,120,744
Total finished length of fin clones w/o overlap
3,086,744
Total overlap length of fin+unfin clones
34,000
Total finished length of fin+unfin clones w/ overlap
3,120,744
Total finished length of fin+unfin clones w/o overlap
3,086,744

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Other links

* quick link - http://q.sanger.ac.uk/zucfykec