ChromoView - clone / Assembly sequencing status

Mouse: Sub region CHO_IDD6.1+2 (TPF updated: 2007-10-29)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH29-169E6
chr6_CHORI29_IDD6.1+2
bCN169E6
EPN details
CU207393.16
finished
2 CH29-505C15
chr6_CHORI29_IDD6.1+2
bCN505C15
EPN details
CU207379.7
finished
3 CH29-172J19
chr6_CHORI29_IDD6.1+2
bCN172J19
EPN details
CU210861.18
finished
4 CH29-567F20
chr6_CHORI29_IDD6.1+2
bCN567F20
EPN details
CU210928.16
finished
  GAP (type-2) length unknown    
6 CH29-2E15
chr6_CHORI29_IDD6.1+2
bCN2E15
EPN details
CU210899.12
finished
7 CH29-149F14
chr6_CHORI29_IDD6.1+2
bCN149F14
EPN details
CU207392.14
finished
8 CH29-34O20
chr6_CHORI29_IDD6.1+2
bCN34O20
EPN details
CU326367.19
finished
9 CH29-170N4
chr6_CHORI29_IDD6.1+2
bCN170N4
EPN details
CU207315.17
finished
10 CH29-494L21
chr6_CHORI29_IDD6.1+2
bCN494L21
EPN details
CU207316.8
finished
11 CH29-33G21
chr6_CHORI29_IDD6.1+2
bCN33G21
EPN details
CU458742.8
finished
12 CH29-136F14
chr6_CHORI29_IDD6.1+2
bCN136F14
EPN details
CU207391.12
finished
13 CH29-191M20
chr6_CHORI29_IDD6.1+2
bCN191M20
EPN details
CU207395.25
finished
14 CH29-115K17
chr6_CHORI29_IDD6.1+2
bCN115K17
EPN details
CU302421.25
finished
  GAP (type-2) length unknown    
16 CH29-548J23
chr6_CHORI29_IDD6.1+2
bCN548J23
EPN details
CU302237.7
finished
  GAP (type-2) length unknown    
18 CH29-566K17
chr6_CHORI29_IDD6.1+2
bCN566K17
EPN details
CU207333.11
finished
19 CH29-502J5
chr6_CHORI29_IDD6.1+2
bCN502J5
EPN details
CU207317.13
finished
20 CH29-491I15
chr6_CHORI29_IDD6.1+2
bCN491I15
EPN details
CU207302.23
finished
21 CH29-521I9
chr6_CHORI29_IDD6.1+2
bCN521I9
EPN details
CU210876.20
finished
22 CH29-183C3
chr6_CHORI29_IDD6.1+2
bCN183C3
EPN details
CU207394.18
finished
23 CH29-600G13
chr6_CHORI29_IDD6.1+2
bCN600G13
EPN details
CU914167.1
finished
24 CH29-77N19
chr6_CHORI29_IDD6.1+2
bCN77N19
EPN details
CU207396.16
finished
25 CH29-565A10
chr6_CHORI29_IDD6.1+2
bCN565A10
EPN details
CU210848.9
finished
26 CH29-29G21
chr6_CHORI29_IDD6.1+2
bCN29G21
EPN details
CU210927.8
finished
  GAP (type-2) length unknown    
28 CH29-26N18
chr6_CHORI29_IDD6.1+2
bCN26N18
EPN details
CU210862.7
finished
29 CH29-76L1
chr6_CHORI29_IDD6.1+2
bCN76L1
EPN details
CU207335.14
finished
30 CH29-97M19
chr6_CHORI29_IDD6.1+2
bCN97M19
EPN details
CU467017.8
finished
31 CH29-526O16
chr6_CHORI29_IDD6.1+2
bCN526O16
EPN details
CU468014.15
finished
32 CH29-612L7
chr6_CHORI29_IDD6.1+2
bCN612L7
EPN details
CU207318.9
finished
33 CH29-30D6
chr6_CHORI29_IDD6.1+2
bCN30D6
EPN details
CU210900.9
finished
  GAP (type-2) length unknown    
35 CH29-493P23
chr6_CHORI29_IDD6.1+2
bCN493P23
EPN details
CU424479.8
finished
36 CH29-565O6
chr6_CHORI29_IDD6.1+2
bCN565O6
EPN details
CU302294.10
finished
  GAP (type-2) length unknown    
38 CH29-607J18
chr6_CHORI29_IDD6.1+2
bCN607J18
EPN details
CU207334.6
finished
39 CH29-68O18
chr6_CHORI29_IDD6.1+2
bCN68O18
EPN details
CU207319.10
finished
40 CH29-115D7
chr6_CHORI29_IDD6.1+2
bCN115D7
EPN details
CU210926.7
finished
41 CH29-522O3
chr6_CHORI29_IDD6.1+2
bCN522O3
EPN details
CU234138.4
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 258336 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU207393.16 1 258336 +
258337 407812 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU207379.7 2001 151476 +
407813 593664 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU210861.18 2001 187852 +
593665 799053 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 4 CU210928.16 2001 207389 +
799054 849053 5 N 50000 contig yes
849054 1003185 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU210899.12 1 154132 +
1003186 1265571 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207392.14 1865 264250 +
1265572 1401044 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU326367.19 2001 137473 +
1401045 1522059 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207315.17 2001 123015 +
1522060 1751385 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207316.8 2001 231326 +
1751386 1788171 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU458742.8 2001 38786 +
1788172 2007603 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207391.12 2001 221432 +
2007604 2135617 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU207395.25 2001 130014 +
2135618 2329557 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 14 CU302421.25 2001 195940 +
2329558 2379557 15 N 50000 contig yes
2379558 2533904 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CU302237.7 1 154347 +
2533905 2583904 17 N 50000 contig yes
2583905 2661508 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207333.11 1 77604 +
2661509 2806127 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207317.13 2001 146619 +
2806128 3055388 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207302.23 2013 251273 +
3055389 3169500 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU210876.20 2001 116112 +
3169501 3376949 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207394.18 2001 209449 +
3376950 3519065 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU914167.1 1 142116 -
3519066 3735501 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU207396.16 15837 232272 +
3735502 3890909 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU210848.9 2001 157408 +
3890910 3909868 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 26 CU210927.8 2001 20959 +
3909869 3959868 27 N 50000 contig yes
3959869 4117284 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU210862.7 1 157416 +
4117285 4315077 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU207335.14 2001 199793 +
4315078 4377113 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU467017.8 2001 64036 +
4377114 4508674 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU468014.15 2001 133561 +
4508675 4726359 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU207318.9 2001 219685 +
4726360 4910792 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 33 CU210900.9 2001 186433 +
4910793 4960792 34 N 50000 contig yes
4960793 5155256 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CU424479.8 1 194464 +
5155257 5343242 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CU302294.10 1 187986 -
5343243 5393242 37 N 50000 contig yes
5393243 5580323 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU207334.6 1 187081 +
5580324 5779759 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU207319.10 2001 201436 +
5779760 5865343 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU210926.7 2001 87584 +
5865344 5956088 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 41 CU234138.4 2001 92745 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH29-169E6
chr6_CHORI29_IDD6.1+2
bCN169E6
EPN details
Submitted to EMBL
13-JAN-09
CU207393.16
finished
258336 CHORI-29 3' / 5'
258336 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
2 CH29-505C15
chr6_CHORI29_IDD6.1+2
bCN505C15
EPN details
Submitted to EMBL
13-JAN-09
CU207379.7
finished
151476 CHORI-29 3' / 5'
151476 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
3 CH29-172J19
chr6_CHORI29_IDD6.1+2
bCN172J19
EPN details
Submitted to EMBL
13-JAN-09
CU210861.18
finished
187852 CHORI-29 3' / 5'
187852 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
4 CH29-567F20
chr6_CHORI29_IDD6.1+2
bCN567F20
EPN details
Submitted to EMBL
13-JAN-09
CU210928.16
finished
207389 CHORI-29        
  GAP (type-2) length unknown                  
6 CH29-2E15
chr6_CHORI29_IDD6.1+2
bCN2E15
EPN details
Submitted to EMBL
13-JAN-09
CU210899.12
finished
154132 CHORI-29 3' / 5'
154132 / 1865
- / -
1864
7.3
Identified
2014-10-21
fetch_ncbi...
humpub
 
7 CH29-149F14
chr6_CHORI29_IDD6.1+2
bCN149F14
EPN details
Submitted to EMBL
13-JAN-09
CU207392.14
finished
264250 CHORI-29 3' / 5'
264250 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
8 CH29-34O20
chr6_CHORI29_IDD6.1+2
bCN34O20
EPN details
Submitted to EMBL
13-JAN-09
CU326367.19
finished
137473 CHORI-29 3' / 5'
137473 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
9 CH29-170N4
chr6_CHORI29_IDD6.1+2
bCN170N4
EPN details
Submitted to EMBL
13-JAN-09
CU207315.17
finished
123015 CHORI-29 3' / 5'
123015 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
10 CH29-494L21
chr6_CHORI29_IDD6.1+2
bCN494L21
EPN details
Submitted to EMBL
13-JAN-09
CU207316.8
finished
231326 CHORI-29 3' / 5'
231326 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
11 CH29-33G21
chr6_CHORI29_IDD6.1+2
bCN33G21
EPN details
Submitted to EMBL
13-JAN-09
CU458742.8
finished
38786 CHORI-29 3' / 5'
38786 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
12 CH29-136F14
chr6_CHORI29_IDD6.1+2
bCN136F14
EPN details
Submitted to EMBL
13-JAN-09
CU207391.12
finished
221432 CHORI-29 3' / 5'
221432 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
13 CH29-191M20
chr6_CHORI29_IDD6.1+2
bCN191M20
EPN details
Submitted to EMBL
13-JAN-09
CU207395.25
finished
130014 CHORI-29 3' / 5'
130014 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
14 CH29-115K17
chr6_CHORI29_IDD6.1+2
bCN115K17
EPN details
Submitted to EMBL
13-JAN-09
CU302421.25
finished
195940 CHORI-29        
  GAP (type-2) length unknown                  
16 CH29-548J23
chr6_CHORI29_IDD6.1+2
bCN548J23
EPN details
Submitted to EMBL
13-JAN-09
CU302237.7
finished
154347 CHORI-29        
  GAP (type-2) length unknown                  
18 CH29-566K17
chr6_CHORI29_IDD6.1+2
bCN566K17
EPN details
Submitted to EMBL
13-JAN-09
CU207333.11
finished
77604 CHORI-29 3' / 5'
77604 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
19 CH29-502J5
chr6_CHORI29_IDD6.1+2
bCN502J5
EPN details
Submitted to EMBL
13-JAN-09
CU207317.13
finished
146619 CHORI-29 3' / 5'
146619 / 2013
- / -
2000
0.6
Identified
2014-10-21
fetch_ncbi...
humpub
 
20 CH29-491I15
chr6_CHORI29_IDD6.1+2
bCN491I15
EPN details
Submitted to EMBL
13-JAN-09
CU207302.23
finished
251273 CHORI-29 3' / 5'
251273 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
21 CH29-521I9
chr6_CHORI29_IDD6.1+2
bCN521I9
EPN details
Submitted to EMBL
13-JAN-09
CU210876.20
finished
116112 CHORI-29 3' / 5'
116112 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
22 CH29-183C3
chr6_CHORI29_IDD6.1+2
bCN183C3
EPN details
Submitted to EMBL
13-JAN-09
CU207394.18
finished
209449 CHORI-29 3' / 3'
209449 / 142116
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
23 CH29-600G13
chr6_CHORI29_IDD6.1+2
bCN600G13
EPN details
Analysed
05-JAN-07
CU914167.1
finished
144116 CHORI-29 5' / 5'
1 / 15837
- / -
15836
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
24 CH29-77N19
chr6_CHORI29_IDD6.1+2
bCN77N19
EPN details
Submitted to EMBL
13-JAN-09
CU207396.16
finished
232272 CHORI-29 3' / 5'
232272 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
25 CH29-565A10
chr6_CHORI29_IDD6.1+2
bCN565A10
EPN details
Submitted to EMBL
13-JAN-09
CU210848.9
finished
157408 CHORI-29 3' / 5'
157408 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
26 CH29-29G21
chr6_CHORI29_IDD6.1+2
bCN29G21
EPN details
Submitted to EMBL
13-JAN-09
CU210927.8
finished
20959 CHORI-29        
  GAP (type-2) length unknown                  
28 CH29-26N18
chr6_CHORI29_IDD6.1+2
bCN26N18
EPN details
Submitted to EMBL
13-JAN-09
CU210862.7
finished
157416 CHORI-29 3' / 5'
157416 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
29 CH29-76L1
chr6_CHORI29_IDD6.1+2
bCN76L1
EPN details
Submitted to EMBL
13-JAN-09
CU207335.14
finished
199793 CHORI-29 3' / 5'
199793 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
30 CH29-97M19
chr6_CHORI29_IDD6.1+2
bCN97M19
EPN details
Submitted to EMBL
13-JAN-09
CU467017.8
finished
64036 CHORI-29 3' / 5'
64036 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
31 CH29-526O16
chr6_CHORI29_IDD6.1+2
bCN526O16
EPN details
Submitted to EMBL
13-JAN-09
CU468014.15
finished
133561 CHORI-29 3' / 5'
133561 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
32 CH29-612L7
chr6_CHORI29_IDD6.1+2
bCN612L7
EPN details
Submitted to EMBL
13-JAN-09
CU207318.9
finished
219685 CHORI-29 3' / 5'
219685 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
33 CH29-30D6
chr6_CHORI29_IDD6.1+2
bCN30D6
EPN details
Submitted to EMBL
13-JAN-09
CU210900.9
finished
186433 CHORI-29        
  GAP (type-2) length unknown                  
35 CH29-493P23
chr6_CHORI29_IDD6.1+2
bCN493P23
EPN details
Submitted to EMBL
13-JAN-09
CU424479.8
finished
194464 CHORI-29 3' / 3'
194464 / 187986
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
36 CH29-565O6
chr6_CHORI29_IDD6.1+2
bCN565O6
EPN details
Submitted to EMBL
13-JAN-09
CU302294.10
finished
189986 CHORI-29        
  GAP (type-2) length unknown                  
38 CH29-607J18
chr6_CHORI29_IDD6.1+2
bCN607J18
EPN details
Submitted to EMBL
13-JAN-09
CU207334.6
finished
187081 CHORI-29 3' / 5'
187081 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
39 CH29-68O18
chr6_CHORI29_IDD6.1+2
bCN68O18
EPN details
Submitted to EMBL
13-JAN-09
CU207319.10
finished
201436 CHORI-29 3' / 5'
201436 / 2001
- / -
2000
0
Identified
2014-10-21
fetch_ncbi...
humpub
 
40 CH29-115D7
chr6_CHORI29_IDD6.1+2
bCN115D7
EPN details
Submitted to EMBL
13-JAN-09
CU210926.7
finished
87584 CHORI-29 3' / 5'
87584 / 2001
- / -
2000
0.15
Identified
2014-10-21
fetch_ncbi...
humpub
 
41 CH29-522O3
chr6_CHORI29_IDD6.1+2
bCN522O3
EPN details
Submitted to EMBL
13-JAN-09
CU234138.4
finished
92745 CHORI-29        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-2
6
Total clones
35
Clone HTGS Phases
finished
35
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
69,700
Total finished length of fin clones w/ overlap
5,725,800
Total finished length of fin clones w/o overlap
5,656,100
Total overlap length of fin+unfin clones
69,700
Total finished length of fin+unfin clones w/ overlap
5,725,800
Total finished length of fin+unfin clones w/o overlap
5,656,100

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Other links

* quick link - http://q.sanger.ac.uk/wp638qsr