ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD9.2 (TPF updated: 2011-06-09)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-165L5
chr4_NOD_IDD9.2
bQ165L5
EPN details
CU210924.3
finished
2 DN-317I23
chr4_NOD_IDD9.2
bQ317I23
EPN details
CU372908.5
finished
  GAP (type-2) length unknown    
4 DN-398J20
chr4_NOD_IDD9.2
bQ398J20
EPN details
CU406987.8
finished
5 DN-207L8
chr4_NOD_IDD9.2
bQ207L8
EPN details
CU466551.4
finished
  GAP (type-2) length unknown    
7 DN-227O17
chr4_NOD_IDD9.2
bQ227O17
EPN details
CU463308.8
finished
  GAP (type-2) length unknown    
9 DN-261H7
chr4_NOD_IDD9.2
bQ261H7
EPN details
CU210855.6
finished
  GAP (type-2) length unknown    
11 DN-169A20
chr4_NOD_IDD9.2
bQ169A20
EPN details
CU207406.7
finished
12 DN-491P11
chr4_NOD_IDD9.2
bQ491P11
EPN details
CU210867.6
finished
13 DN-408I5
chr4_NOD_IDD9.2
bQ408I5
EPN details
CU207376.7
finished
14 DN-51D6
chr4_NOD_IDD9.2
bQ51D6
EPN details
CU207417.13
finished
15 DN-45G14
chr4_NOD_IDD9.2
bQ45G14
EPN details
CU210838.16
finished
16 DN-248M11
chr4_NOD_IDD9.2
bQ248M11
EPN details
CU210865.6
finished
17 DN-205E10
chr4_NOD_IDD9.2
bQ205E10
EPN details
CU207387.6
finished
18 DN-182F24
chr4_NOD_IDD9.2
bQ182F24
EPN details
CU207385.10
finished
19 DN-303I20
chr4_NOD_IDD9.2
bQ303I20
EPN details
CU234132.14
finished
20 DN-129K11
chr4_NOD_IDD9.2
bQ129K11
EPN details
CU207405.9
finished
21 DN-78H3
chr4_NOD_IDD9.2
bQ78H3
EPN details
CU210839.7
finished
22 DN-290E6
chr4_NOD_IDD9.2
bQ290E6
EPN details
CU207415.5
finished
23 DN-383K11
chr4_NOD_IDD9.2
bQ383K11
EPN details
CU207374.15
finished
24 DN-314K24
chr4_NOD_IDD9.2
bQ314K24
EPN details
CU302290.9
finished
25 DN-280P13
chr4_NOD_IDD9.2
bQ280P13
EPN details
CU210912.6
finished
26 DN-105C13
chr4_NOD_IDD9.2
bQ105C13
EPN details
CU207384.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 160228 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU210924.3 1 160228 -
160229 236190 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CU372908.5 2001 77962 +
236191 286190 3 N 50000 contig yes
286191 501864 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CU406987.8 1 215674 -
501865 554083 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 CU466551.4 88734 140952 +
554084 604083 6 N 50000 contig yes
604084 801606 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 CU463308.8 1 197523 +
801607 851606 8 N 50000 contig yes
851607 1007120 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CU210855.6 1 155514 +
1007121 1057120 10 N 50000 contig yes
1057121 1250997 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207406.7 1 193877 +
1250998 1303373 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU210867.6 2001 54376 +
1303374 1414656 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207376.7 2001 113283 +
1414657 1569691 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207417.13 2001 157035 +
1569692 1706693 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU210838.16 2001 139002 +
1706694 1854507 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU210865.6 43639 191452 +
1854508 1893081 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207387.6 2001 40574 +
1893082 2013898 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207385.10 2001 122817 +
2013899 2168316 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU234132.14 2001 156418 +
2168317 2298374 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207405.9 2001 132058 +
2298375 2436972 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU210839.7 2001 140598 +
2436973 2630987 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207415.5 2001 196015 +
2630988 2722125 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207374.15 2001 93138 +
2722126 2831427 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU302290.9 2001 111302 +
2831428 2914099 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU210912.6 2001 84672 +
2914100 3066692 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 26 CU207384.8 2001 154593 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-165L5
chr4_NOD_IDD9.2
bQ165L5
EPN details
Submitted to EMBL
13-JAN-09
CU210924.3
finished
160228 DIL NOD 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
2 DN-317I23
chr4_NOD_IDD9.2
bQ317I23
EPN details
Submitted to EMBL
13-JAN-09
CU372908.5
finished
77962 DIL NOD        
  GAP (type-2) length unknown                  
4 DN-398J20
chr4_NOD_IDD9.2
bQ398J20
EPN details
Submitted to EMBL
13-JAN-09
CU406987.8
finished
215674 DIL NOD 5' / 5'
1 / 88734
- / -
88751
0
Identified
2011-06-10
find_overl...
humpub
 
5 DN-207L8
chr4_NOD_IDD9.2
bQ207L8
EPN details
Submitted to EMBL
13-JAN-09
CU466551.4
finished
140952 DIL NOD        
  GAP (type-2) length unknown                  
7 DN-227O17
chr4_NOD_IDD9.2
bQ227O17
EPN details
Analysed
15-DEC-07
CU463308.8
finished
197523 DIL NOD        
  GAP (type-2) length unknown                  
9 DN-261H7
chr4_NOD_IDD9.2
bQ261H7
EPN details
Submitted to EMBL
13-JAN-09
CU210855.6
finished
155514 DIL NOD        
  GAP (type-2) length unknown                  
11 DN-169A20
chr4_NOD_IDD9.2
bQ169A20
EPN details
Submitted to EMBL
13-JAN-09
CU207406.7
finished
193877 DIL NOD 3' / 5'
193877 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
12 DN-491P11
chr4_NOD_IDD9.2
bQ491P11
EPN details
Submitted to EMBL
13-JAN-09
CU210867.6
finished
54376 DIL NOD 3' / 5'
54376 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
13 DN-408I5
chr4_NOD_IDD9.2
bQ408I5
EPN details
Submitted to EMBL
13-JAN-09
CU207376.7
finished
113283 DIL NOD 3' / 5'
113283 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
14 DN-51D6
chr4_NOD_IDD9.2
bQ51D6
EPN details
Submitted to EMBL
13-JAN-09
CU207417.13
finished
157035 DIL NOD 3' / 5'
157035 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
15 DN-45G14
chr4_NOD_IDD9.2
bQ45G14
EPN details
Submitted to EMBL
13-JAN-09
CU210838.16
finished
139002 DIL NOD 3' / 5'
139002 / 43639
- / -
43637
6.05
Identified
2014-09-22
fetch_ncbi...
humpub
 
16 DN-248M11
chr4_NOD_IDD9.2
bQ248M11
EPN details
Submitted to EMBL
13-JAN-09
CU210865.6
finished
191452 DIL NOD 3' / 5'
191452 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
17 DN-205E10
chr4_NOD_IDD9.2
bQ205E10
EPN details
Submitted to EMBL
13-JAN-09
CU207387.6
finished
40574 DIL NOD 3' / 5'
40574 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
18 DN-182F24
chr4_NOD_IDD9.2
bQ182F24
EPN details
Submitted to EMBL
13-JAN-09
CU207385.10
finished
122817 DIL NOD 3' / 5'
122817 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
19 DN-303I20
chr4_NOD_IDD9.2
bQ303I20
EPN details
Submitted to EMBL
13-JAN-09
CU234132.14
finished
156418 DIL NOD 3' / 5'
156418 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
20 DN-129K11
chr4_NOD_IDD9.2
bQ129K11
EPN details
Submitted to EMBL
13-JAN-09
CU207405.9
finished
132058 DIL NOD 3' / 5'
132058 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
21 DN-78H3
chr4_NOD_IDD9.2
bQ78H3
EPN details
Submitted to EMBL
13-JAN-09
CU210839.7
finished
140598 DIL NOD 3' / 5'
140598 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
22 DN-290E6
chr4_NOD_IDD9.2
bQ290E6
EPN details
Submitted to EMBL
13-JAN-09
CU207415.5
finished
196015 DIL NOD 3' / 5'
196015 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
23 DN-383K11
chr4_NOD_IDD9.2
bQ383K11
EPN details
Submitted to EMBL
13-JAN-09
CU207374.15
finished
93138 DIL NOD 3' / 5'
93138 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
24 DN-314K24
chr4_NOD_IDD9.2
bQ314K24
EPN details
Submitted to EMBL
13-JAN-09
CU302290.9
finished
111302 DIL NOD 3' / 5'
111302 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
25 DN-280P13
chr4_NOD_IDD9.2
bQ280P13
EPN details
Submitted to EMBL
13-JAN-09
CU210912.6
finished
84672 DIL NOD 3' / 5'
84672 / 2001
- / -
2000
0
Identified
2014-09-22
fetch_ncbi...
humpub
 
26 DN-105C13
chr4_NOD_IDD9.2
bQ105C13
EPN details
Submitted to EMBL
13-JAN-09
CU207384.8
finished
154593 DIL NOD        

Statistics

Clone Summary

Number of gaps
4
Gap types
type-2
4
Total clones
22
Clone HTGS Phases
finished
22
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
162,388
Total finished length of fin clones w/ overlap
3,029,063
Total finished length of fin clones w/o overlap
2,866,675
Total overlap length of fin+unfin clones
162,388
Total finished length of fin+unfin clones w/ overlap
3,029,063
Total finished length of fin+unfin clones w/o overlap
2,866,675

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Other links

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