ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD9.1 (TPF updated: 2007-07-24)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-232I22
chr4_NOD_IDD9.1
bQ232I22
EPN details
CU372907.16
finished
2 DN-240L13
chr4_NOD_IDD9.1
bQ240L13
EPN details
CU210837.8
finished
3 DN-152A21
chr4_NOD_IDD9.1
bQ152A21
EPN details
CU467499.7
finished
4 DN-183P11
chr4_NOD_IDD9.1
bQ183P11
EPN details
CU207361.21
finished
5 DN-258P20
chr4_NOD_IDD9.1
bQ258P20
EPN details
CU210866.8
finished
6 DN-200E13
chr4_NOD_IDD9.1
bQ200E13
EPN details
CU210925.4
finished
7 DN-236B5
chr4_NOD_IDD9.1
bQ236B5
EPN details
CU207362.5
finished
8 DN-321E19
chr4_NOD_IDD9.1
bQ321E19
EPN details
CU234133.8
finished
9 DN-11J18
chr4_NOD_IDD9.1
bQ11J18
EPN details
CU302431.10
finished
10 DN-246M21
chr4_NOD_IDD9.1
bQ246M21
EPN details
CU372919.4
finished
11 DN-400L16
chr4_NOD_IDD9.1
bQ400L16
EPN details
CU210937.2
finished
12 DN-38P14
chr4_NOD_IDD9.1
bQ38P14
EPN details
CU210913.6
finished
13 DN-195E12
chr4_NOD_IDD9.1
bQ195E12
EPN details
CU207347.9
finished
14 DN-229E18
chr4_NOD_IDD9.1
bQ229E18
EPN details
CU207372.6
finished
15 DN-297B1
chr4_NOD_IDD9.1
bQ297B1
EPN details
CU210846.9
finished
16 DN-498D17
chr4_NOD_IDD9.1
bQ498D17
EPN details
CU407307.5
finished
  GAP (type-2) length unknown    
18 DN-191K1
chr4_NOD_IDD9.1
bQ191K1
EPN details
CU302433.11
finished
19 DN-389N18
chr4_NOD_IDD9.1
bQ389N18
EPN details
CU207375.12
finished
20 DN-161J11
chr4_NOD_IDD9.1
bQ161J11
EPN details
CU459017.18
finished
21 DN-431B21
chr4_NOD_IDD9.1
bQ431B21
EPN details
CU210856.14
finished
  GAP (type-2) length unknown    
23 DN-143J9
chr4_NOD_IDD9.1
bQ143J9
EPN details
CU457817.14
finished
24 DN-55C18
chr4_NOD_IDD9.1
bQ55C18
EPN details
CU207418.11
finished
25 DN-189H18
chr4_NOD_IDD9.1
bQ189H18
EPN details
CU463837.8
finished
26 DN-375D1
chr4_NOD_IDD9.1
bQ375D1
EPN details
CU210874.8
finished
27 DN-202E11
chr4_NOD_IDD9.1
bQ202E11
EPN details
CU207386.8
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 126360 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU372907.16 1 126360 +
126361 307180 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210837.8 2001 182820 +
307181 439087 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU467499.7 2001 133907 +
439088 471224 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207361.21 2001 34137 +
471225 672873 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210866.8 2001 203649 +
672874 783322 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210925.4 2001 112449 +
783323 903071 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207362.5 2001 121749 +
903072 1022851 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU234133.8 2001 121780 +
1022852 1145204 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU302431.10 2001 124353 +
1145205 1147198 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU372919.4 2001 3994 +
1147199 1310757 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210937.2 2001 165559 +
1310758 1429367 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210913.6 2001 120610 +
1429368 1598831 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207347.9 2001 171464 +
1598832 1737433 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU207372.6 2001 140602 +
1737434 1870343 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU210846.9 2001 134910 +
1870344 1939298 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 16 CU407307.5 2001 70955 +
1939299 1989298 17 N 50000 contig yes
1989299 2010425 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU302433.11 1 21127 +
2010426 2199462 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU207375.12 2001 191037 +
2199463 2271565 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU459017.18 2001 74103 +
2271566 2405918 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU210856.14 2001 136353 +
2405919 2455918 22 N 50000 contig yes
2455919 2543367 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU457817.14 1 87449 +
2543368 2738758 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU207418.11 1 195391 -
2738759 2846412 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU463837.8 2001 109654 +
2846413 2899266 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU210874.8 2001 54854 +
2899267 3050841 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 27 CU207386.8 2001 153575 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-232I22
chr4_NOD_IDD9.1
bQ232I22
EPN details
Submitted to EMBL
13-JAN-09
CU372907.16
finished
126360 DIL NOD 3' / 5'
126360 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
2 DN-240L13
chr4_NOD_IDD9.1
bQ240L13
EPN details
Submitted to EMBL
13-JAN-09
CU210837.8
finished
182820 DIL NOD 3' / 5'
182820 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
3 DN-152A21
chr4_NOD_IDD9.1
bQ152A21
EPN details
Submitted to EMBL
13-JAN-09
CU467499.7
finished
133907 DIL NOD 3' / 5'
133907 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
4 DN-183P11
chr4_NOD_IDD9.1
bQ183P11
EPN details
Submitted to EMBL
13-JAN-09
CU207361.21
finished
34137 DIL NOD 3' / 5'
34137 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
5 DN-258P20
chr4_NOD_IDD9.1
bQ258P20
EPN details
Submitted to EMBL
13-JAN-09
CU210866.8
finished
203649 DIL NOD 3' / 5'
203649 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
6 DN-200E13
chr4_NOD_IDD9.1
bQ200E13
EPN details
Submitted to EMBL
13-JAN-09
CU210925.4
finished
112449 DIL NOD 3' / 5'
112449 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
7 DN-236B5
chr4_NOD_IDD9.1
bQ236B5
EPN details
Submitted to EMBL
13-JAN-09
CU207362.5
finished
121749 DIL NOD 3' / 5'
121749 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
8 DN-321E19
chr4_NOD_IDD9.1
bQ321E19
EPN details
Submitted to EMBL
13-JAN-09
CU234133.8
finished
121780 DIL NOD 3' / 5'
121780 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
9 DN-11J18
chr4_NOD_IDD9.1
bQ11J18
EPN details
Submitted to EMBL
13-JAN-09
CU302431.10
finished
124353 DIL NOD 3' / 5'
124353 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
10 DN-246M21
chr4_NOD_IDD9.1
bQ246M21
EPN details
Submitted to EMBL
13-JAN-09
CU372919.4
finished
3994 DIL NOD 3' / 5'
3994 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
11 DN-400L16
chr4_NOD_IDD9.1
bQ400L16
EPN details
Submitted to EMBL
13-JAN-09
CU210937.2
finished
165559 DIL NOD 3' / 5'
165559 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
12 DN-38P14
chr4_NOD_IDD9.1
bQ38P14
EPN details
Submitted to EMBL
13-JAN-09
CU210913.6
finished
120610 DIL NOD 3' / 5'
120610 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
13 DN-195E12
chr4_NOD_IDD9.1
bQ195E12
EPN details
Submitted to EMBL
13-JAN-09
CU207347.9
finished
171464 DIL NOD 3' / 5'
171464 / 2001
- / -
2000
0.5
Identified
2014-07-27
fetch_ncbi...
humpub
 
14 DN-229E18
chr4_NOD_IDD9.1
bQ229E18
EPN details
Submitted to EMBL
13-JAN-09
CU207372.6
finished
140602 DIL NOD 3' / 5'
140602 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
15 DN-297B1
chr4_NOD_IDD9.1
bQ297B1
EPN details
Submitted to EMBL
13-JAN-09
CU210846.9
finished
134910 DIL NOD 3' / 5'
134910 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
16 DN-498D17
chr4_NOD_IDD9.1
bQ498D17
EPN details
Submitted to EMBL
13-JAN-09
CU407307.5
finished
70955 DIL NOD        
  GAP (type-2) length unknown                  
18 DN-191K1
chr4_NOD_IDD9.1
bQ191K1
EPN details
Submitted to EMBL
13-JAN-09
CU302433.11
finished
21127 DIL NOD 3' / 5'
21127 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
19 DN-389N18
chr4_NOD_IDD9.1
bQ389N18
EPN details
Submitted to EMBL
13-JAN-09
CU207375.12
finished
191037 DIL NOD 3' / 5'
191037 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
20 DN-161J11
chr4_NOD_IDD9.1
bQ161J11
EPN details
Submitted to EMBL
13-JAN-09
CU459017.18
finished
74103 DIL NOD 3' / 5'
74103 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
21 DN-431B21
chr4_NOD_IDD9.1
bQ431B21
EPN details
Submitted to EMBL
13-JAN-09
CU210856.14
finished
136353 DIL NOD        
  GAP (type-2) length unknown                  
23 DN-143J9
chr4_NOD_IDD9.1
bQ143J9
EPN details
Submitted to EMBL
13-JAN-09
CU457817.14
finished
87449 DIL NOD 3' / 3'
87449 / 195391
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
24 DN-55C18
chr4_NOD_IDD9.1
bQ55C18
EPN details
Submitted to EMBL
13-JAN-09
CU207418.11
finished
197391 DIL NOD 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
25 DN-189H18
chr4_NOD_IDD9.1
bQ189H18
EPN details
Submitted to EMBL
13-JAN-09
CU463837.8
finished
109654 DIL NOD 3' / 5'
109654 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
26 DN-375D1
chr4_NOD_IDD9.1
bQ375D1
EPN details
Submitted to EMBL
13-JAN-09
CU210874.8
finished
54854 DIL NOD 3' / 5'
54854 / 2001
- / -
2000
0
Identified
2014-07-27
fetch_ncbi...
humpub
 
27 DN-202E11
chr4_NOD_IDD9.1
bQ202E11
EPN details
Submitted to EMBL
13-JAN-09
CU207386.8
finished
153575 DIL NOD        

Statistics

Clone Summary

Number of gaps
2
Gap types
type-2
2
Total clones
25
Clone HTGS Phases
finished
25
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
44,000
Total finished length of fin clones w/ overlap
2,994,841
Total finished length of fin clones w/o overlap
2,950,841
Total overlap length of fin+unfin clones
44,000
Total finished length of fin+unfin clones w/ overlap
2,994,841
Total finished length of fin+unfin clones w/o overlap
2,950,841

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Other links

* quick link - http://q.sanger.ac.uk/ly7v05st