ChromoView - clone / Assembly sequencing status

Mouse: Sub region CHO_IDD6.3 (TPF updated: 2008-10-01)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH29-38P9
chr6_CHORI29_IDD6.3
bCN38P9
EPN details
CU210875.9
finished
2 CH29-493D4
chr6_CHORI29_IDD6.3
bCN493D4
EPN details
CU207332.5
finished
3 CH29-4H7
chr6_CHORI29_IDD6.3
bCN4H7
EPN details
CU469450.4
finished
4 CH29-575J15
chr6_CHORI29_IDD6.3
bCN575J15
EPN details
CU463286.9
finished
5 CH29-540A18
chr6_CHORI29_IDD6.3
bCN540A18
EPN details
CU570803.6
finished
6 CH29-171N14
chr6_CHORI29_IDD6.3
bCN171N14
EPN details
CU424478.6
finished
  GAP (type-2) length unknown    
8 CH29-584N12
chr6_CHORI29_IDD6.3
bCN584N12
EPN details
CU442703.8
finished
9 CH29-511G10
chr6_CHORI29_IDD6.3
bCN511G10
EPN details
CU467659.6
finished
  GAP (type-2) length unknown    
11 CH29-166C20
chr6_CHORI29_IDD6.3
bCN166C20
EPN details
CU407130.7
finished
  GAP (type-2) length unknown    
13 CH29-112O17
chr6_CHORI29_IDD6.3
bCN112O17
EPN details
CU468027.8
finished
14 CH29-175G16
chr6_CHORI29_IDD6.3
bCN175G16
EPN details
CU457745.7
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 168971 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 6 CU210875.9 1 168971 +
168972 394373 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 6 CU207332.5 2001 227402 +
394374 444464 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 6 CU469450.4 2001 52091 +
444465 619618 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 6 CU463286.9 2001 177154 +
619619 709987 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 6 CU570803.6 2001 92369 +
709988 885356 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 6 CU424478.6 2001 177369 +
885357 935356 7 N 50000 contig yes
935357 1097084 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 CU442703.8 1 161728 -
1097085 1178608 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 8 - 9 CU467659.6 2001 83524 +
1178609 1228608 10 N 50000 contig yes
1228609 1443068 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 11 CU407130.7 1 214460 +
1443069 1493068 12 N 50000 contig yes
1493069 1593448 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 CU468027.8 1 100380 +
1593449 1759414 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 CU457745.7 2001 167966 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH29-38P9
chr6_CHORI29_IDD6.3
bCN38P9
EPN details
Submitted to EMBL
12-JAN-09
CU210875.9
finished
168971 CHORI-29 3' / 5'
168971 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
2 CH29-493D4
chr6_CHORI29_IDD6.3
bCN493D4
EPN details
Submitted to EMBL
12-JAN-09
CU207332.5
finished
227402 CHORI-29 3' / 5'
227402 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
3 CH29-4H7
chr6_CHORI29_IDD6.3
bCN4H7
EPN details
Submitted to EMBL
12-JAN-09
CU469450.4
finished
52091 CHORI-29 3' / 5'
52091 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
4 CH29-575J15
chr6_CHORI29_IDD6.3
bCN575J15
EPN details
Submitted to EMBL
12-JAN-09
CU463286.9
finished
177154 CHORI-29 3' / 5'
177154 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
5 CH29-540A18
chr6_CHORI29_IDD6.3
bCN540A18
EPN details
Submitted to EMBL
12-JAN-09
CU570803.6
finished
92369 CHORI-29 3' / 5'
92369 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
6 CH29-171N14
chr6_CHORI29_IDD6.3
bCN171N14
EPN details
Submitted to EMBL
12-JAN-09
CU424478.6
finished
177369 CHORI-29        
  GAP (type-2) length unknown                  
8 CH29-584N12
chr6_CHORI29_IDD6.3
bCN584N12
EPN details
Submitted to EMBL
12-JAN-09
CU442703.8
finished
161728 CHORI-29 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
9 CH29-511G10
chr6_CHORI29_IDD6.3
bCN511G10
EPN details
Submitted to EMBL
12-JAN-09
CU467659.6
finished
83524 CHORI-29        
  GAP (type-2) length unknown                  
11 CH29-166C20
chr6_CHORI29_IDD6.3
bCN166C20
EPN details
Submitted to EMBL
12-JAN-09
CU407130.7
finished
214460 CHORI-29        
  GAP (type-2) length unknown                  
13 CH29-112O17
chr6_CHORI29_IDD6.3
bCN112O17
EPN details
Submitted to EMBL
12-JAN-09
CU468027.8
finished
100380 CHORI-29 3' / 5'
100380 / 2001
- / -
2000
0
Identified
2014-02-27
fetch_ncbi...
humpub
 
14 CH29-175G16
chr6_CHORI29_IDD6.3
bCN175G16
EPN details
Submitted to EMBL
12-JAN-09
CU457745.7
finished
167966 CHORI-29        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-2
3
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
14,000
Total finished length of fin clones w/ overlap
1,623,414
Total finished length of fin clones w/o overlap
1,609,414
Total overlap length of fin+unfin clones
14,000
Total finished length of fin+unfin clones w/ overlap
1,623,414
Total finished length of fin+unfin clones w/o overlap
1,609,414

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Other links

* quick link - http://q.sanger.ac.uk/cwacmnqk