ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD5.3 (TPF updated: 2008-04-04)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DN-189H16
chr1_NOD_IDD5.3
bQ189H16
CU407129.10
finished
2 DN-78O3
chr1_NOD_IDD5.3
bQ78O3
CU392853.2
finished
3 DN-113H18
chr1_NOD_IDD5.3
bQ113H18
CU406962.8
finished
4 DN-500J16
chr1_NOD_IDD5.3
bQ500J16
CU424488.5
finished
5 DN-239K2
chr1_NOD_IDD5.3
bQ239K2
CU368751.6
finished
6 DN-297H21
chr1_NOD_IDD5.3
bQ297H21
CU442724.6
finished
7 DN-91B14
chr1_NOD_IDD5.3
bQ91B14
CU424489.10
finished
8 DN-36B11
chr1_NOD_IDD5.3
bQ36B11
CU392848.5
finished
9 DN-92I8
chr1_NOD_IDD5.3
bQ92I8
CU442760.6
finished
10 DN-238I7
chr1_NOD_IDD5.3
bQ238I7
CU329676.6
finished
11 DN-80C21
chr1_NOD_IDD5.3
bQ80C21
CU302198.4
finished
12 DN-328G15
chr1_NOD_IDD5.3
bQ328G15
CU407305.6
finished
13 DN-232J23
chr1_NOD_IDD5.3
bQ232J23
CU457480.8
finished
14 DN-321F3
chr1_NOD_IDD5.3
bQ321F3
CU459074.36
finished
15 DN-239C14
chr1_NOD_IDD5.3
bQ239C14
CU372918.5
finished
16 DN-308F13
chr1_NOD_IDD5.3
bQ308F13
CU369554.5
finished
17 DN-521A23
chr1_NOD_IDD5.3
bQ521A23
CU372922.5
finished
18 DN-88L9
chr1_NOD_IDD5.3
bQ88L9
CU372910.8
finished
19 DN-142L10
chr1_NOD_IDD5.3
bQ142L10
CU372905.3
finished
20 DN-451I14
chr1_NOD_IDD5.3
bQ451I14
CU468163.3
finished
21 DN-286K15
chr1_NOD_IDD5.3
bQ286K15
CU392847.12
finished
22 DN-293C11
chr1_NOD_IDD5.3
bQ293C11
CU468299.2
finished
  GAP (type-2) length unknown    
24 DN-517L23
chr1_NOD_IDD5.3
bQ517L23
CU392849.6
finished
25 DN-488B7
chr1_NOD_IDD5.3
bQ488B7
CU459008.2
finished
26 DN-427K8
chr1_NOD_IDD5.3
bQ427K8
CU459207.8
finished
27 DN-20I11
chr1_NOD_IDD5.3
bQ20I11
CU368746.3
finished
28 DN-108B7
chr1_NOD_IDD5.3
bQ108B7
CU405881.7
finished
29 DN-97F10
chr1_NOD_IDD5.3
bQ97F10
CU442761.5
finished
30 DN-70A17
chr1_NOD_IDD5.3
bQ70A17
CU372923.6
finished
31 DN-39P9
chr1_NOD_IDD5.3
bQ39P9
CU372909.5
finished
32 DN-226F16
chr1_NOD_IDD5.3
bQ226F16
CU372906.4
finished
33 DN-10I6
chr1_NOD_IDD5.3
bQ10I6
CU407006.6
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 88916 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU407129.10 1 88916 +
88917 242863 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU392853.2 1 153947 -
242864 406313 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU406962.8 2001 165450 +
406314 436690 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU424488.5 2001 32377 +
436691 578951 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU368751.6 2001 144261 +
578952 752584 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU442724.6 2001 175633 +
752585 858738 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU424489.10 2001 108154 +
858739 1017323 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU392848.5 2001 160585 +
1017324 1088936 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU442760.6 2001 73613 +
1088937 1154924 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU329676.6 2001 67988 +
1154925 1333464 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU302198.4 2001 180540 +
1333465 1484639 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU407305.6 2001 153175 +
1484640 1627288 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU457480.8 2001 144649 +
1627289 1738992 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU459074.36 2001 113704 +
1738993 1858021 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372918.5 2001 121029 +
1858022 1878937 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU369554.5 2001 22916 +
1878938 1934889 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372922.5 2001 57952 +
1934890 2104436 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372910.8 2001 171547 +
2104437 2242214 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372905.3 2001 139778 +
2242215 2243577 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU468163.3 2001 3363 +
2243578 2408491 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU392847.12 2001 166914 +
2408492 2485442 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU468299.2 2001 78951 +
2485443 2535442 23 N 50000 contig yes
2535443 2666794 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU392849.6 1 131352 +
2666795 2730059 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU459008.2 2001 65265 +
2730060 2786584 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU459207.8 2001 58525 +
2786585 2943911 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU368746.3 1 157327 -
2943912 3103066 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU405881.7 7568 166722 +
3103067 3146328 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU442761.5 2001 45262 +
3146329 3290780 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU372923.6 1996 146447 +
3290781 3455931 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU372909.5 2001 167151 +
3455932 3615568 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU372906.4 2001 161637 +
3615569 3760957 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU407006.6 2001 147389 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
32
Clone HTGS Phases
finished
32
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
65,561
Total finished length of fin clones w/ overlap
3,776,519
Total finished length of fin clones w/o overlap
3,710,958
Total overlap length of fin+unfin clones
65,561
Total finished length of fin+unfin clones w/ overlap
3,776,519
Total finished length of fin+unfin clones w/o overlap
3,710,958

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Other links

* quick link - http://q.sanger.ac.uk/mvqi94bs