ChromoView - clone / Assembly sequencing status

Mouse: Sub region NOD_IDD5.3 (TPF updated: 2008-04-04)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DN-189H16
chr1_NOD_IDD5.3
bQ189H16
EPN details
CU407129.10
finished
2 DN-78O3
chr1_NOD_IDD5.3
bQ78O3
EPN details
CU392853.2
finished
3 DN-113H18
chr1_NOD_IDD5.3
bQ113H18
EPN details
CU406962.8
finished
4 DN-500J16
chr1_NOD_IDD5.3
bQ500J16
EPN details
CU424488.5
finished
5 DN-239K2
chr1_NOD_IDD5.3
bQ239K2
EPN details
CU368751.6
finished
6 DN-297H21
chr1_NOD_IDD5.3
bQ297H21
EPN details
CU442724.6
finished
7 DN-91B14
chr1_NOD_IDD5.3
bQ91B14
EPN details
CU424489.10
finished
8 DN-36B11
chr1_NOD_IDD5.3
bQ36B11
EPN details
CU392848.5
finished
9 DN-92I8
chr1_NOD_IDD5.3
bQ92I8
EPN details
CU442760.6
finished
10 DN-238I7
chr1_NOD_IDD5.3
bQ238I7
EPN details
CU329676.6
finished
11 DN-80C21
chr1_NOD_IDD5.3
bQ80C21
EPN details
CU302198.4
finished
12 DN-328G15
chr1_NOD_IDD5.3
bQ328G15
EPN details
CU407305.6
finished
13 DN-232J23
chr1_NOD_IDD5.3
bQ232J23
EPN details
CU457480.8
finished
14 DN-321F3
chr1_NOD_IDD5.3
bQ321F3
EPN details
CU459074.36
finished
15 DN-239C14
chr1_NOD_IDD5.3
bQ239C14
EPN details
CU372918.5
finished
16 DN-308F13
chr1_NOD_IDD5.3
bQ308F13
EPN details
CU369554.5
finished
17 DN-521A23
chr1_NOD_IDD5.3
bQ521A23
EPN details
CU372922.5
finished
18 DN-88L9
chr1_NOD_IDD5.3
bQ88L9
EPN details
CU372910.8
finished
19 DN-142L10
chr1_NOD_IDD5.3
bQ142L10
EPN details
CU372905.3
finished
20 DN-451I14
chr1_NOD_IDD5.3
bQ451I14
EPN details
CU468163.3
finished
21 DN-286K15
chr1_NOD_IDD5.3
bQ286K15
EPN details
CU392847.12
finished
22 DN-293C11
chr1_NOD_IDD5.3
bQ293C11
EPN details
CU468299.2
finished
  GAP (type-2) length unknown    
24 DN-517L23
chr1_NOD_IDD5.3
bQ517L23
EPN details
CU392849.6
finished
25 DN-488B7
chr1_NOD_IDD5.3
bQ488B7
EPN details
CU459008.2
finished
26 DN-427K8
chr1_NOD_IDD5.3
bQ427K8
EPN details
CU459207.8
finished
27 DN-20I11
chr1_NOD_IDD5.3
bQ20I11
EPN details
CU368746.3
finished
28 DN-108B7
chr1_NOD_IDD5.3
bQ108B7
EPN details
CU405881.7
finished
29 DN-97F10
chr1_NOD_IDD5.3
bQ97F10
EPN details
CU442761.5
finished
30 DN-70A17
chr1_NOD_IDD5.3
bQ70A17
EPN details
CU372923.6
finished
31 DN-39P9
chr1_NOD_IDD5.3
bQ39P9
EPN details
CU372909.5
finished
32 DN-226F16
chr1_NOD_IDD5.3
bQ226F16
EPN details
CU372906.4
finished
33 DN-10I6
chr1_NOD_IDD5.3
bQ10I6
EPN details
CU407006.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 88916 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU407129.10 1 88916 +
88917 242863 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU392853.2 1 153947 -
242864 406313 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU406962.8 2001 165450 +
406314 436690 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU424488.5 2001 32377 +
436691 578951 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU368751.6 2001 144261 +
578952 752584 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU442724.6 2001 175633 +
752585 858738 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU424489.10 2001 108154 +
858739 1017323 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU392848.5 2001 160585 +
1017324 1088936 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU442760.6 2001 73613 +
1088937 1154924 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU329676.6 2001 67988 +
1154925 1333464 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU302198.4 2001 180540 +
1333465 1484639 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU407305.6 2001 153175 +
1484640 1627288 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU457480.8 2001 144649 +
1627289 1738992 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU459074.36 2001 113704 +
1738993 1858021 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372918.5 2001 121029 +
1858022 1878937 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU369554.5 2001 22916 +
1878938 1934889 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372922.5 2001 57952 +
1934890 2104436 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372910.8 2001 171547 +
2104437 2242214 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU372905.3 2001 139778 +
2242215 2243577 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU468163.3 2001 3363 +
2243578 2408491 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU392847.12 2001 166914 +
2408492 2485442 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 22 CU468299.2 2001 78951 +
2485443 2535442 23 N 50000 contig yes
2535443 2666794 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU392849.6 1 131352 +
2666795 2730059 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU459008.2 2001 65265 +
2730060 2786584 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU459207.8 2001 58525 +
2786585 2943911 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU368746.3 1 157327 -
2943912 3103066 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU405881.7 7568 166722 +
3103067 3146328 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU442761.5 2001 45262 +
3146329 3290780 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU372923.6 1996 146447 +
3290781 3455931 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU372909.5 2001 167151 +
3455932 3615568 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU372906.4 2001 161637 +
3615569 3760957 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 33 CU407006.6 2001 147389 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DN-189H16
chr1_NOD_IDD5.3
bQ189H16
EPN details
Submitted to EMBL
13-JAN-09
CU407129.10
finished
88916 DIL NOD 3' / 3'
88916 / 153947
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
2 DN-78O3
chr1_NOD_IDD5.3
bQ78O3
EPN details
Submitted to EMBL
13-JAN-09
CU392853.2
finished
155947 DIL NOD 5' / 5'
1 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
3 DN-113H18
chr1_NOD_IDD5.3
bQ113H18
EPN details
Submitted to EMBL
13-JAN-09
CU406962.8
finished
165450 DIL NOD 3' / 5'
165450 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
4 DN-500J16
chr1_NOD_IDD5.3
bQ500J16
EPN details
Submitted to EMBL
13-JAN-09
CU424488.5
finished
32377 DIL NOD 3' / 5'
32377 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
5 DN-239K2
chr1_NOD_IDD5.3
bQ239K2
EPN details
Submitted to EMBL
13-JAN-09
CU368751.6
finished
144261 DIL NOD 3' / 5'
144261 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
6 DN-297H21
chr1_NOD_IDD5.3
bQ297H21
EPN details
Submitted to EMBL
13-JAN-09
CU442724.6
finished
175633 DIL NOD 3' / 5'
175633 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
7 DN-91B14
chr1_NOD_IDD5.3
bQ91B14
EPN details
Submitted to EMBL
13-JAN-09
CU424489.10
finished
108154 DIL NOD 3' / 5'
108154 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
8 DN-36B11
chr1_NOD_IDD5.3
bQ36B11
EPN details
Submitted to EMBL
13-JAN-09
CU392848.5
finished
160585 DIL NOD 3' / 5'
160585 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
9 DN-92I8
chr1_NOD_IDD5.3
bQ92I8
EPN details
Submitted to EMBL
13-JAN-09
CU442760.6
finished
73613 DIL NOD 3' / 5'
73613 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
10 DN-238I7
chr1_NOD_IDD5.3
bQ238I7
EPN details
Submitted to EMBL
13-JAN-09
CU329676.6
finished
67988 DIL NOD 3' / 5'
67988 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
11 DN-80C21
chr1_NOD_IDD5.3
bQ80C21
EPN details
Submitted to EMBL
13-JAN-09
CU302198.4
finished
180540 DIL NOD 3' / 5'
180540 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
12 DN-328G15
chr1_NOD_IDD5.3
bQ328G15
EPN details
Submitted to EMBL
13-JAN-09
CU407305.6
finished
153175 DIL NOD 3' / 5'
153175 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
13 DN-232J23
chr1_NOD_IDD5.3
bQ232J23
EPN details
Submitted to EMBL
13-JAN-09
CU457480.8
finished
144649 DIL NOD 3' / 5'
144649 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
14 DN-321F3
chr1_NOD_IDD5.3
bQ321F3
EPN details
Analysed
18-NOV-08
CU459074.36
finished
113704 DIL NOD 3' / 5'
113704 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
15 DN-239C14
chr1_NOD_IDD5.3
bQ239C14
EPN details
Submitted to EMBL
13-JAN-09
CU372918.5
finished
121029 DIL NOD 3' / 5'
121029 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
16 DN-308F13
chr1_NOD_IDD5.3
bQ308F13
EPN details
Submitted to EMBL
13-JAN-09
CU369554.5
finished
22916 DIL NOD 3' / 5'
22916 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
17 DN-521A23
chr1_NOD_IDD5.3
bQ521A23
EPN details
Submitted to EMBL
13-JAN-09
CU372922.5
finished
57952 DIL NOD 3' / 5'
57952 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
18 DN-88L9
chr1_NOD_IDD5.3
bQ88L9
EPN details
Submitted to EMBL
13-JAN-09
CU372910.8
finished
171547 DIL NOD 3' / 5'
171547 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
19 DN-142L10
chr1_NOD_IDD5.3
bQ142L10
EPN details
Submitted to EMBL
13-JAN-09
CU372905.3
finished
139778 DIL NOD 3' / 5'
139778 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
20 DN-451I14
chr1_NOD_IDD5.3
bQ451I14
EPN details
Submitted to EMBL
13-JAN-09
CU468163.3
finished
3363 DIL NOD 3' / 5'
3363 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
21 DN-286K15
chr1_NOD_IDD5.3
bQ286K15
EPN details
Submitted to EMBL
13-JAN-09
CU392847.12
finished
166914 DIL NOD 3' / 5'
166914 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
22 DN-293C11
chr1_NOD_IDD5.3
bQ293C11
EPN details
Analysed
04-OCT-07
CU468299.2
finished
78951 DIL NOD        
  GAP (type-2) length unknown                  
24 DN-517L23
chr1_NOD_IDD5.3
bQ517L23
EPN details
Submitted to EMBL
13-JAN-09
CU392849.6
finished
131352 DIL NOD 3' / 5'
131352 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
25 DN-488B7
chr1_NOD_IDD5.3
bQ488B7
EPN details
Submitted to EMBL
13-JAN-09
CU459008.2
finished
65265 DIL NOD 3' / 5'
65265 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
26 DN-427K8
chr1_NOD_IDD5.3
bQ427K8
EPN details
Submitted to EMBL
13-JAN-09
CU459207.8
finished
58525 DIL NOD 3' / 3'
58525 / 157327
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
27 DN-20I11
chr1_NOD_IDD5.3
bQ20I11
EPN details
Submitted to EMBL
13-JAN-09
CU368746.3
finished
159327 DIL NOD 5' / 5'
1 / 7568
- / -
7567
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
28 DN-108B7
chr1_NOD_IDD5.3
bQ108B7
EPN details
Submitted to EMBL
13-JAN-09
CU405881.7
finished
166722 DIL NOD 3' / 5'
166722 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
29 DN-97F10
chr1_NOD_IDD5.3
bQ97F10
EPN details
Submitted to EMBL
13-JAN-09
CU442761.5
finished
45262 DIL NOD 3' / 5'
45262 / 1996
- / -
1995
0.25
Identified
2014-10-23
fetch_ncbi...
humpub
 
30 DN-70A17
chr1_NOD_IDD5.3
bQ70A17
EPN details
Submitted to EMBL
13-JAN-09
CU372923.6
finished
146447 DIL NOD 3' / 5'
146447 / 2001
- / -
1999
0.1
Identified
2014-10-23
fetch_ncbi...
humpub
 
31 DN-39P9
chr1_NOD_IDD5.3
bQ39P9
EPN details
Submitted to EMBL
13-JAN-09
CU372909.5
finished
167151 DIL NOD 3' / 5'
167151 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
32 DN-226F16
chr1_NOD_IDD5.3
bQ226F16
EPN details
Submitted to EMBL
13-JAN-09
CU372906.4
finished
161637 DIL NOD 3' / 5'
161637 / 2001
- / -
2000
0
Identified
2014-10-23
fetch_ncbi...
humpub
 
33 DN-10I6
chr1_NOD_IDD5.3
bQ10I6
EPN details
Submitted to EMBL
13-JAN-09
CU407006.6
finished
147389 DIL NOD        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-2
1
Total clones
32
Clone HTGS Phases
finished
32
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
65,561
Total finished length of fin clones w/ overlap
3,776,519
Total finished length of fin clones w/o overlap
3,710,958
Total overlap length of fin+unfin clones
65,561
Total finished length of fin+unfin clones w/ overlap
3,776,519
Total finished length of fin+unfin clones w/o overlap
3,710,958

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Other links

* quick link - http://q.sanger.ac.uk/mvqi94bs