ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_MANN (TPF updated: 2008-09-11)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 DAMA-184I15
Hschr6_MHC_MANN_ctg1
bMA184I15
EPN details
BX908720.10
finished
  GAP (type-2) length 38391 bps    
3 DAMA-186H17
Hschr6_MHC_MANN_ctg1
bMA186H17
EPN details
CR388210.7
finished
4 DAMA-364L23
Hschr6_MHC_MANN_ctg1
bMA364L23
EPN details
BX927250.5
finished
5 DAMA-80H6
Hschr6_MHC_MANN_ctg1
bMA80H6
EPN details
BX927182.6
finished
6 DAMA-50J3
Hschr6_MHC_MANN_ctg1
bMA50J3
EPN details
BX927141.7
finished
7 DAMA-247D1
Hschr6_MHC_MANN_ctg1
bMA247D1
EPN details
CR382333.7
finished
8 DAMA-377D17
Hschr6_MHC_MANN_ctg1
bMA377D17
EPN details
BX927229.6
finished
9 DAMA-291L16
Hschr6_MHC_MANN_ctg1
bMA291L16
EPN details
CT009552.2
finished
10 DAMA-361I19
Hschr6_MHC_MANN_ctg1
bMA361I19
EPN details
BX927221.6
finished
11 DAMA-83L10
Hschr6_MHC_MANN_ctg1
bMA83L10
EPN details
BX927189.6
finished
12 DAMA-368F21
Hschr6_MHC_MANN_ctg1
bMA368F21
EPN details
BX927214.4
finished
13 DAMA-55G21
Hschr6_MHC_MANN_ctg1
bMA55G21
EPN details
BX927143.4
finished
14 DAMA-277I14
Hschr6_MHC_MANN_ctg1
bMA277I14
EPN details
CR382280.5
finished
15 DAMA-199F12
Hschr6_MHC_MANN_ctg1
bMA199F12
EPN details
BX927220.8
finished
16 DAMA-178G23
Hschr6_MHC_MANN_ctg1
bMA178G23
EPN details
BX908728.7
finished
17 DAMA-26D6
Hschr6_MHC_MANN_ctg1
bMA26D6
EPN details
BX927283.4
finished
  GAP (type-2) length 8701 bps    
19 DAMA-63A3
Hschr6_MHC_MANN_ctg1
bMA63A3
EPN details
CT009501.6
finished
20 DAMA-220E23
Hschr6_MHC_MANN_ctg1
bMA220E23
EPN details
CR847861.4
finished
21 DAMA-342O2
Hschr6_MHC_MANN_ctg1
bMA342O2
EPN details
BX927194.9
finished
  GAP (type-2) length 24813 bps    
23 DAMA-153A13
Hschr6_MHC_MANN_ctg1
bMA153A13
EPN details
CT009610.7
finished
  GAP (type-2) length 12319 bps    
25 DAMA-72F24
Hschr6_MHC_MANN_ctg1
bMA72F24
EPN details
BX927139.8
finished
26 DAMA-213L4
Hschr6_MHC_MANN_ctg1
bMA213L4
EPN details
CR847794.5
finished
  GAP (type-2) length 23910 bps    
28 DAMA-198I19
Hschr6_MHC_MANN_ctg1
bMA198I19
EPN details
CR847781.3
finished
29 DAMA-387C9
Hschr6_MHC_MANN_ctg1
bMA387C9
EPN details
BX927178.8
finished
30 DAMA-187L7
Hschr6_MHC_MANN_ctg1
bMA187L7
EPN details
CR318637.4
finished
31 DAMA-345G11
Hschr6_MHC_MANN_ctg1
bMA345G11
EPN details
CR847852.10
finished
  GAP (type-2) length 38947 bps    
33 DAMA-25N12
Hschr6_MHC_MANN_ctg1
bMA25N12
EPN details
BX927320.5
finished
34 DAMA-335N23
Hschr6_MHC_MANN_ctg1
bMA335N23
EPN details
CR925833.3
finished
  GAP (type-2) length 8460 bps    
36 DAMA-236L13
Hschr6_MHC_MANN_ctg1
bMA236L13
EPN details
CR354443.4
finished
  GAP (type-2) length 89346 bps    
38 DAMA-196C9
Hschr6_MHC_MANN_ctg1
bMA196C9
EPN details
CR933877.4
finished
  GAP (type-2) length 52932 bps    
40 DAMA-89M7
Hschr6_MHC_MANN_ctg1
bMA89M7
EPN details
CR933857.3
finished
41 DAMA-163J4
Hschr6_MHC_MANN_ctg1
bMA163J4
EPN details
CR388180.5
finished
  GAP (type-2) length 113131 bps    
43 DAMA-239A17
Hschr6_MHC_MANN_ctg1
bMA239A17
EPN details
CR547132.3
finished
  GAP (type-2) length 38609 bps    
45 DAMA-358M23
Hschr6_MHC_MANN_ctg1
bMA358M23
EPN details
BX927239.5
finished
  GAP (type-2) length 4286 bps    
47 DAMA-333A22
Hschr6_MHC_MANN_ctg1
bMA333A22
EPN details
CR753609.4
finished
48 DAMA-391O5
Hschr6_MHC_MANN_ctg1
bMA391O5
EPN details
BX927180.9
finished
49 DAMA-178J18
Hschr6_MHC_MANN_ctg1
bMA178J18
EPN details
BX908732.13
finished
50 DAMA-224B5
Hschr6_MHC_MANN_ctg1
bMA224B5
EPN details
CR354545.5
finished
51 DAMA-25D9
Hschr6_MHC_MANN_ctg1
bMA25D9
EPN details
BX927235.7
finished
  GAP (type-2) length 31249 bps    
53 DAMA-109M12
Hschr6_MHC_MANN_ctg1
bMA109M12
EPN details
CR933540.9
finished
54 DAMA-265D9
Hschr6_MHC_MANN_ctg1
bMA265D9
EPN details
CR753835.3
finished
55 DAMA-367I24
Hschr6_MHC_MANN_ctg1
bMA367I24
EPN details
BX927168.11
finished
56 DAMA-57K5
Hschr6_MHC_MANN_ctg1
bMA57K5
EPN details
BX927160.7
finished
57 DAMA-273O23
Hschr6_MHC_MANN_ctg1
bMA273O23
EPN details
CR752661.4
finished
  GAP (type-2) length 8145 bps    
59 DAMA-353C16
Hschr6_MHC_MANN_ctg1
bMA353C16
EPN details
CT009500.4
finished
60 DAMA-91I23
Hschr6_MHC_MANN_ctg1
bMA91I23
EPN details
BX927138.5
finished
61 DAMA-147C13
Hschr6_MHC_MANN_ctg1
bMA147C13
EPN details
BX908719.9
finished
62 DAMA-214M2
Hschr6_MHC_MANN_ctg1
bMA214M2
EPN details
CR936909.2
finished
  GAP (type-2) length 39283 bps    
64 DAMA-245O6
Hschr6_MHC_MANN_ctg1
bMA245O6
EPN details
CR847849.5
finished
65 DAMA-248N13
Hschr6_MHC_MANN_ctg1
bMA248N13
EPN details
CR354565.6
finished
66 DAMA-222K3
Hschr6_MHC_MANN_ctg1
bMA222K3
EPN details
CR847841.4
finished
67 DAMA-258A19
Hschr6_MHC_MANN_ctg1
bMA258A19
EPN details
CR547129.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 132528 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 BX908720.10 1 132528 +
132529 170919 2 N 38391 contig yes
170920 235115 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 8 CR388210.7 1 64196 +
235116 325745 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 8 BX927250.5 2001 92630 +
325746 375394 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 8 BX927182.6 2001 51649 +
375395 498799 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 8 BX927141.7 2001 125405 +
498800 549572 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 8 CR382333.7 2001 52773 +
549573 660199 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 3 - 8 BX927229.6 2001 112627 +
660200 694180 9 F CT009552.2
Double 5-prime join to 'CT009552.2'
9113 43093 -
694181 699180 10 N 5000 Bad overlap - double 5 prime join    
699181 772189 11 F BX927221.6
Double 3-prime join to 'BX927221.6'
1 73009 +
772190 777189 12 N 5000 Bad overlap - double 3 prime join    
777190 899519 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 BX927189.6 2001 124330 +
899520 1011209 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 BX927214.4 2001 113690 +
1011210 1068817 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 BX927143.4 2001 59608 +
1068818 1095093 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 CR382280.5 2001 28276 +
1095094 1175817 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 BX927220.8 2001 82724 +
1175818 1278572 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 BX908728.7 2001 104755 +
1278573 1312788 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 19 BX927283.4 2001 36216 +
1312789 1321489 20 N 8701 contig yes
1321490 1394625 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CT009501.6 1 73136 +
1394626 1409373 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 CR847861.4 2001 16748 +
1409374 1517581 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 23 BX927194.9 2001 110208 +
1517582 1542394 24 N 24813 contig yes
1542395 1577659 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 25 - 25 CT009610.7 1 35265 +
1577660 1589978 26 N 12319 contig yes
1589979 1725374 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 BX927139.8 1 135396 +
1725375 1782420 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 27 - 28 CR847794.5 2001 59046 +
1782421 1806330 29 N 23910 contig yes # ALIGNMENT
1806331 1842758 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR847781.3 1 36428 +
1842759 1946957 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 BX927178.8 2001 106199 +
1946958 1983173 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR318637.4 2001 38216 +
1983174 2037374 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 33 CR847852.10 2001 56201 +
2037375 2076321 34 N 38947 contig yes # ALIGNMENT
2076322 2176730 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 BX927320.5 1 100409 +
2176731 2186464 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 36 CR925833.3 2001 11734 +
2186465 2194924 37 N 8460 contig yes
2194925 2327475 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 38 CR354443.4 1 132551 +
2327476 2416821 39 N 89346 contig yes
2416822 2439639 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 40 CR933877.4 1 22818 +
2439640 2492571 41 N 52932 contig yes
2492572 2526194 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 43 CR933857.3 1 33623 +
2526195 2526729 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 43 CR388180.5 1335 1869 +
2526730 2639860 44 N 113131 contig yes
2639861 2677626 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CR547132.3 1 37766 +
2677627 2716235 46 N 38609 contig yes # PCR
2716236 2818823 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 BX927239.5 1 102588 +
2818824 2823109 48 N 4286 contig yes # ALIGNMENT
2823110 2841389 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 53 CR753609.4 1 18280 +
2841390 2908863 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 53 BX927180.9 2001 69474 +
2908864 3008723 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 53 BX908732.13 2001 101860 +
3008724 3063218 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 53 CR354545.5 2001 56495 +
3063219 3160460 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 53 BX927235.7 2001 99242 +
3160461 3191709 54 N 31249 contig yes # ALIGNMENT
3191710 3229139 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 59 CR933540.9 1 37430 +
3229140 3328203 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 59 CR753835.3 2001 101064 +
3328204 3435529 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 59 BX927168.11 2001 109326 +
3435530 3473137 58 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 59 BX927160.7 2001 39608 +
3473138 3502318 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 55 - 59 CR752661.4 2001 31181 +
3502319 3510463 60 N 8145 contig yes
3510464 3525131 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 64 CT009500.4 1 14668 +
3525132 3633987 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 64 BX927138.5 2001 110856 +
3633988 3668217 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 64 BX908719.9 2001 36230 +
3668218 3707026 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 61 - 64 CR936909.2 2001 40809 +
3707027 3746309 65 N 39283 contig yes
3746310 3834472 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 69 CR847849.5 1 88163 +
3834473 3894354 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 69 CR354565.6 2001 61882 +
3894355 3900753 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 69 CR847841.4 2001 8399 +
3900754 3948631 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 69 CR547129.3 2001 49878 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 DAMA-184I15
Hschr6_MHC_MANN_ctg1
bMA184I15
EPN details
Submitted to EMBL
12-JAN-09
BX908720.10
finished
132528 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 38391 bps                  
3 DAMA-186H17
Hschr6_MHC_MANN_ctg1
bMA186H17
EPN details
Submitted to EMBL
12-JAN-09
CR388210.7
finished
64196 DNA-Arts BAC library MANN.1 3' / 5'
64196 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
4 DAMA-364L23
Hschr6_MHC_MANN_ctg1
bMA364L23
EPN details
Submitted to EMBL
12-JAN-09
BX927250.5
finished
92630 DNA-Arts BAC library MANN.1 3' / 5'
92630 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
5 DAMA-80H6
Hschr6_MHC_MANN_ctg1
bMA80H6
EPN details
Submitted to EMBL
12-JAN-09
BX927182.6
finished
51649 DNA-Arts BAC library MANN.1 3' / 5'
51649 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
6 DAMA-50J3
Hschr6_MHC_MANN_ctg1
bMA50J3
EPN details
Submitted to EMBL
12-JAN-09
BX927141.7
finished
125405 DNA-Arts BAC library MANN.1 3' / 5'
125405 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
7 DAMA-247D1
Hschr6_MHC_MANN_ctg1
bMA247D1
EPN details
Submitted to EMBL
12-JAN-09
CR382333.7
finished
52773 DNA-Arts BAC library MANN.1 3' / 5'
52773 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
8 DAMA-377D17
Hschr6_MHC_MANN_ctg1
bMA377D17
EPN details
Submitted to EMBL
12-JAN-09
BX927229.6
finished
112627 DNA-Arts BAC library MANN.1 3' / 5'
112627 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
9 DAMA-291L16
Hschr6_MHC_MANN_ctg1
bMA291L16
EPN details
Submitted to EMBL
12-JAN-09
CT009552.2
finished
43093 DNA-Arts BAC library MANN.1 5' / 3'
9113 / 72378
8996 / 631
118
12.06
Identified
2008-07-03
find_overl...
humpub
 
10 DAMA-361I19
Hschr6_MHC_MANN_ctg1
bMA361I19
EPN details
Submitted to EMBL
12-JAN-09
BX927221.6
finished
73009 DNA-Arts BAC library MANN.1 3' / 5'
73009 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
11 DAMA-83L10
Hschr6_MHC_MANN_ctg1
bMA83L10
EPN details
Submitted to EMBL
12-JAN-09
BX927189.6
finished
124330 DNA-Arts BAC library MANN.1 3' / 5'
124330 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
12 DAMA-368F21
Hschr6_MHC_MANN_ctg1
bMA368F21
EPN details
Submitted to EMBL
12-JAN-09
BX927214.4
finished
113690 DNA-Arts BAC library MANN.1 3' / 5'
113690 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
13 DAMA-55G21
Hschr6_MHC_MANN_ctg1
bMA55G21
EPN details
Submitted to EMBL
12-JAN-09
BX927143.4
finished
59608 DNA-Arts BAC library MANN.1 3' / 5'
59608 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
14 DAMA-277I14
Hschr6_MHC_MANN_ctg1
bMA277I14
EPN details
Submitted to EMBL
12-JAN-09
CR382280.5
finished
28276 DNA-Arts BAC library MANN.1 3' / 5'
28276 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
15 DAMA-199F12
Hschr6_MHC_MANN_ctg1
bMA199F12
EPN details
Submitted to EMBL
12-JAN-09
BX927220.8
finished
82724 DNA-Arts BAC library MANN.1 3' / 5'
82724 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
16 DAMA-178G23
Hschr6_MHC_MANN_ctg1
bMA178G23
EPN details
Submitted to EMBL
12-JAN-09
BX908728.7
finished
104755 DNA-Arts BAC library MANN.1 3' / 5'
104755 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
17 DAMA-26D6
Hschr6_MHC_MANN_ctg1
bMA26D6
EPN details
Submitted to EMBL
12-JAN-09
BX927283.4
finished
36216 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 8701 bps                  
19 DAMA-63A3
Hschr6_MHC_MANN_ctg1
bMA63A3
EPN details
Submitted to EMBL
12-JAN-09
CT009501.6
finished
73136 DNA-Arts BAC library MANN.1 3' / 5'
73136 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
20 DAMA-220E23
Hschr6_MHC_MANN_ctg1
bMA220E23
EPN details
Submitted to EMBL
12-JAN-09
CR847861.4
finished
16748 DNA-Arts BAC library MANN.1 3' / 5'
16748 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
21 DAMA-342O2
Hschr6_MHC_MANN_ctg1
bMA342O2
EPN details
Submitted to EMBL
12-JAN-09
BX927194.9
finished
110208 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 24813 bps                  
23 DAMA-153A13
Hschr6_MHC_MANN_ctg1
bMA153A13
EPN details
Submitted to EMBL
12-JAN-09
CT009610.7
finished
35265 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 12319 bps                  
25 DAMA-72F24
Hschr6_MHC_MANN_ctg1
bMA72F24
EPN details
Submitted to EMBL
12-JAN-09
BX927139.8
finished
135396 DNA-Arts BAC library MANN.1 3' / 5'
135396 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
26 DAMA-213L4
Hschr6_MHC_MANN_ctg1
bMA213L4
EPN details
Submitted to EMBL
12-JAN-09
CR847794.5
finished
59046 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 23910 bps                  
28 DAMA-198I19
Hschr6_MHC_MANN_ctg1
bMA198I19
EPN details
Analysed
10-NOV-04
CR847781.3
finished
36428 DNA-Arts BAC library MANN.1 3' / 5'
36428 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
29 DAMA-387C9
Hschr6_MHC_MANN_ctg1
bMA387C9
EPN details
Submitted to EMBL
12-JAN-09
BX927178.8
finished
106199 DNA-Arts BAC library MANN.1 3' / 5'
106199 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
30 DAMA-187L7
Hschr6_MHC_MANN_ctg1
bMA187L7
EPN details
Submitted to EMBL
12-JAN-09
CR318637.4
finished
38216 DNA-Arts BAC library MANN.1 3' / 5'
38216 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
31 DAMA-345G11
Hschr6_MHC_MANN_ctg1
bMA345G11
EPN details
Submitted to EMBL
12-JAN-09
CR847852.10
finished
56201 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 38947 bps                  
33 DAMA-25N12
Hschr6_MHC_MANN_ctg1
bMA25N12
EPN details
Submitted to EMBL
12-JAN-09
BX927320.5
finished
100409 DNA-Arts BAC library MANN.1 3' / 5'
100409 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
34 DAMA-335N23
Hschr6_MHC_MANN_ctg1
bMA335N23
EPN details
Submitted to EMBL
12-JAN-09
CR925833.3
finished
11734 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 8460 bps                  
36 DAMA-236L13
Hschr6_MHC_MANN_ctg1
bMA236L13
EPN details
Analysed
12-APR-11
CR354443.4
finished
132551 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 89346 bps                  
38 DAMA-196C9
Hschr6_MHC_MANN_ctg1
bMA196C9
EPN details
Submitted to EMBL
12-JAN-09
CR933877.4
finished
22818 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 52932 bps                  
40 DAMA-89M7
Hschr6_MHC_MANN_ctg1
bMA89M7
EPN details
Submitted to EMBL
12-JAN-09
CR933857.3
finished
33623 DNA-Arts BAC library MANN.1 3' / 5'
33623 / 1335
- / -
1334
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
41 DAMA-163J4
Hschr6_MHC_MANN_ctg1
bMA163J4
EPN details
Submitted to EMBL
12-JAN-09
CR388180.5
finished
1869 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 113131 bps                  
43 DAMA-239A17
Hschr6_MHC_MANN_ctg1
bMA239A17
EPN details
Submitted to EMBL
12-JAN-09
CR547132.3
finished
37766 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 38609 bps                  
45 DAMA-358M23
Hschr6_MHC_MANN_ctg1
bMA358M23
EPN details
Submitted to EMBL
12-JAN-09
BX927239.5
finished
102588 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 4286 bps                  
47 DAMA-333A22
Hschr6_MHC_MANN_ctg1
bMA333A22
EPN details
Submitted to EMBL
12-JAN-09
CR753609.4
finished
18280 DNA-Arts BAC library MANN.1 3' / 5'
18280 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
48 DAMA-391O5
Hschr6_MHC_MANN_ctg1
bMA391O5
EPN details
Submitted to EMBL
12-JAN-09
BX927180.9
finished
69474 DNA-Arts BAC library MANN.1 3' / 5'
69474 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
49 DAMA-178J18
Hschr6_MHC_MANN_ctg1
bMA178J18
EPN details
Submitted to EMBL
12-JAN-09
BX908732.13
finished
101860 DNA-Arts BAC library MANN.1 3' / 5'
101860 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
50 DAMA-224B5
Hschr6_MHC_MANN_ctg1
bMA224B5
EPN details
Submitted to EMBL
12-JAN-09
CR354545.5
finished
56495 DNA-Arts BAC library MANN.1 3' / 5'
56495 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
51 DAMA-25D9
Hschr6_MHC_MANN_ctg1
bMA25D9
EPN details
Submitted to EMBL
12-JAN-09
BX927235.7
finished
99242 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 31249 bps                  
53 DAMA-109M12
Hschr6_MHC_MANN_ctg1
bMA109M12
EPN details
Submitted to EMBL
12-JAN-09
CR933540.9
finished
37430 DNA-Arts BAC library MANN.1 3' / 5'
37430 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
54 DAMA-265D9
Hschr6_MHC_MANN_ctg1
bMA265D9
EPN details
Submitted to EMBL
12-JAN-09
CR753835.3
finished
101064 DNA-Arts BAC library MANN.1 3' / 5'
101064 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
55 DAMA-367I24
Hschr6_MHC_MANN_ctg1
bMA367I24
EPN details
Submitted to EMBL
12-JAN-09
BX927168.11
finished
109326 DNA-Arts BAC library MANN.1 3' / 5'
109326 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
56 DAMA-57K5
Hschr6_MHC_MANN_ctg1
bMA57K5
EPN details
Submitted to EMBL
12-JAN-09
BX927160.7
finished
39608 DNA-Arts BAC library MANN.1 3' / 5'
39608 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
57 DAMA-273O23
Hschr6_MHC_MANN_ctg1
bMA273O23
EPN details
Submitted to EMBL
12-JAN-09
CR752661.4
finished
31181 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 8145 bps                  
59 DAMA-353C16
Hschr6_MHC_MANN_ctg1
bMA353C16
EPN details
Submitted to EMBL
12-JAN-09
CT009500.4
finished
14668 DNA-Arts BAC library MANN.1 3' / 5'
14668 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
60 DAMA-91I23
Hschr6_MHC_MANN_ctg1
bMA91I23
EPN details
Submitted to EMBL
12-JAN-09
BX927138.5
finished
110856 DNA-Arts BAC library MANN.1 3' / 5'
110856 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
61 DAMA-147C13
Hschr6_MHC_MANN_ctg1
bMA147C13
EPN details
Submitted to EMBL
12-JAN-09
BX908719.9
finished
36230 DNA-Arts BAC library MANN.1 3' / 5'
36230 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
62 DAMA-214M2
Hschr6_MHC_MANN_ctg1
bMA214M2
EPN details
Submitted to EMBL
12-JAN-09
CR936909.2
finished
40809 DNA-Arts BAC library MANN.1        
  GAP (type-2) length 39283 bps                  
64 DAMA-245O6
Hschr6_MHC_MANN_ctg1
bMA245O6
EPN details
Submitted to EMBL
12-JAN-09
CR847849.5
finished
88163 DNA-Arts BAC library MANN.1 3' / 5'
88163 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
65 DAMA-248N13
Hschr6_MHC_MANN_ctg1
bMA248N13
EPN details
Submitted to EMBL
12-JAN-09
CR354565.6
finished
61882 DNA-Arts BAC library MANN.1 3' / 5'
61882 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
66 DAMA-222K3
Hschr6_MHC_MANN_ctg1
bMA222K3
EPN details
Submitted to EMBL
12-JAN-09
CR847841.4
finished
8399 DNA-Arts BAC library MANN.1 3' / 5'
8399 / 2001
- / -
2000
0
Identified
2014-07-24
fetch_ncbi...
humpub
 
67 DAMA-258A19
Hschr6_MHC_MANN_ctg1
bMA258A19
EPN details
Submitted to EMBL
12-JAN-09
CR547129.3
finished
49878 DNA-Arts BAC library MANN.1        

Statistics

Clone Summary

Number of gaps
15
Gap types
type-2
15
Total clones
52
Clone HTGS Phases
finished
52
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
69,452
Total finished length of fin clones w/ overlap
3,482,555
Total finished length of fin clones w/o overlap
3,413,103
Total overlap length of fin+unfin clones
69,452
Total finished length of fin+unfin clones w/ overlap
3,482,555
Total finished length of fin+unfin clones w/o overlap
3,413,103

AGP errors

# rank accession seq_start seq_end strand error date
1 9 CT009552.2 9,113 43,093 -1 Double 5-prime join to 'CT009552.2' Fri, 25 Jul 2014 00:03
2 11 BX927221.6 1 73,009 1 Double 3-prime join to 'BX927221.6' Fri, 25 Jul 2014 00:03

Dovetails

# rank accession status length date
1 9 CT009552.2 unfinished 8,996 Fri, 25 Jul 2014 00:03
2 10 BX927221.6 unfinished 631 Fri, 25 Jul 2014 00:03

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Other links

* quick link - http://q.sanger.ac.uk/6rho8e40