ChromoView - clone / Assembly sequencing status

X.tropicalis: Sub region TROP_RAND (TPF updated: 2006-04-18)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CH216-28I17
lw2_jgi
bC216_28I17
AC147837.3
finished
2 CH216-74C22
lw2_jgi
bC216_74C22
AC147907.3
finished
  GAP (type-4) length unknown    
4 ISB1-266O23
lw2_jgi
bISB1_266O23
AC149894.2
finished
5 ISB1-292J12
lw2_jgi
bISB1_292J12
AC151328.2
finished
  GAP (type-4) length unknown    
7 CH216-5M3
lw2_jgi
bC216_5M3
AC147177.2
finished
8 CH216-54E8
lw2_jgi
bC216_54E8
AC147175.3
finished
  GAP (type-4) length unknown    
10 ISB1-14A23
lw2_jgi
bISB1_14A23
AC149889.2
finished
11 ISB1-145C16
lw2_jgi
bISB1_145C16
AC149886.2
finished
  GAP (type-4) length unknown    
13 ISB1-2E20
lw2_jgi
bISB1_2E20
AC149159.2
finished
  GAP (type-4) length unknown    
15 ISB1-49A6
lw2_jgi
bISB1_49A6
AC149539.2
finished
16 ISB1-258L19
lw2_jgi
bISB1_258L19
AC149156.3
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 181154 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC147837.3 1 181154 +
181155 194648 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC147907.3 1 13494 -
194649 244648 3 N 50000 contig no
244649 321423 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC149894.2 1 76775 -
321424 377706 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC151328.2 1 56283 -
377707 427706 6 N 50000 contig no
427707 484269 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC147177.2 1 56563 +
484270 489269 8 N 5000 No overlap in database    
489270 677166 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC147175.3 1 187897 +
677167 727166 10 N 50000 contig no
727167 755564 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC149889.2 72311 100708 -
755565 868948 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC149886.2 1 113384 +
868949 918948 13 N 50000 contig no
918949 995685 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 AC149159.2 1 76737 +
995686 1045685 15 N 50000 contig no
1045686 1083500 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 AC149539.2 23747 61561 -
1083501 1150904 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 AC149156.3 2664 70067 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CH216-28I17
lw2_jgi
bC216_28I17
-
-
AC147837.3
finished
181154 CHORI-216 3' / 3'
181154 / 13494
- / -
170591
0
Identified
2006-09-09
find_overl...
badger
 
2 CH216-74C22
lw2_jgi
bC216_74C22
-
-
AC147907.3
finished
184085 CHORI-216        
  GAP (type-4) length unknown                  
4 ISB1-266O23
lw2_jgi
bISB1_266O23
-
-
AC149894.2
finished
76775 ISB-1 5' / 3'
1 / 56283
- / 33191
38
0
Identified
2008-07-03
find_overl...
humpub
 
5 ISB1-292J12
lw2_jgi
bISB1_292J12
-
-
AC151328.2
finished
89512 ISB-1        
  GAP (type-4) length unknown                  
7 CH216-5M3
lw2_jgi
bC216_5M3
-
-
AC147177.2
finished
56563 CHORI-216        
8 CH216-54E8
lw2_jgi
bC216_54E8
-
-
AC147175.3
finished
187897 CHORI-216        
  GAP (type-4) length unknown                  
10 ISB1-14A23
lw2_jgi
bISB1_14A23
-
-
AC149889.2
finished
100708 ISB-1 5' / 5'
72311 / 1
- / -
72414
0.25
Identified
2006-04-18
find_overl...
jgrg
 
11 ISB1-145C16
lw2_jgi
bISB1_145C16
-
-
AC149886.2
finished
113384 ISB-1        
  GAP (type-4) length unknown                  
13 ISB1-2E20
lw2_jgi
bISB1_2E20
-
-
AC149159.2
finished
76737 ISB-1        
  GAP (type-4) length unknown                  
15 ISB1-49A6
lw2_jgi
bISB1_49A6
-
-
AC149539.2
finished
61561 ISB-1 5' / 5'
23747 / 2664
23424 / 2663
338
16.15
Identified
2008-07-03
find_overl...
humpub
 
16 ISB1-258L19
lw2_jgi
bISB1_258L19
-
-
AC149156.3
finished
70067 ISB-1        

Statistics

Clone Summary

Number of gaps
5
Gap types
type-4
5
Total clones
11
Clone HTGS Phases
finished
11
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
243,381
Total finished length of fin clones w/ overlap
1,198,443
Total finished length of fin clones w/o overlap
955,062
Total overlap length of fin+unfin clones
243,381
Total finished length of fin+unfin clones w/ overlap
1,198,443
Total finished length of fin+unfin clones w/o overlap
955,062

Dovetails

# rank accession status length date
1 5 AC151328.2 unfinished 33,191 Thu, 18 Sep 2014 02:24
2 15 AC149539.2 unfinished 23,424 Thu, 18 Sep 2014 02:24
3 16 AC149156.3 unfinished 2,663 Thu, 18 Sep 2014 02:24

Search

Search Project, Accession or International clone name:

Select region

Other links

* quick link - http://q.sanger.ac.uk/8ylvoonc