ChromoView - clone / Assembly sequencing status

Mouse: Sub region MHC_129 (TPF updated: 2006-04-13)

TPF

# Clone ext/Contig Clone int Acc/Fin
1
mhc_129
AF110520
AF110520.1
finished
2
mhc_129
AF100956
AF100956.1
finished
3
mhc_129
AF027865
AF027865.1
finished
4
mhc_129
AF050157
AF050157.1
finished
5
mhc_129
AF030001
AF030001.1
finished
6
mhc_129
AF049850
AF049850.1
finished
7
mhc_129
AF109906
AF109906.1
finished
8
mhc_129
AF109905
AF109905.1
finished
9
mhc_129
AF109719
AF109719.2
finished
10
mhc_129
AC007080
AC007080.2
finished
  GAP (type-3) length unknown    
12
mhc_129
AF111102
AF111102.2
finished
13
mhc_129
AF111103
AF111103.1
finished
  GAP (type-3) length unknown    
15
mhc_129
AC005960
AC005960.1
finished
  GAP (type-3) length unknown    
17 CT7-573K1
mhc_129
Cl/Pr bP573K1/bM573K1 swap
EPN details
AL078630.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 213245 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF110520.1 1 213245 +
213246 436085 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF100956.1 50961 273800 +
436086 552250 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF027865.1 22023 138187 +
552251 772977 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF050157.1 24713 245439 +
772978 974361 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF030001.1 577 201960 +
974362 1124159 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF049850.1 89 149886 +
1124160 1258784 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF109906.1 23781 158405 +
1258785 1362492 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF109905.1 31838 135545 +
1362493 1481292 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AF109719.2 946 119745 +
1481293 1521201 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 10 AC007080.2 1 39909 +
1521202 1571201 11 N 50000 contig no
1571202 1666680 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 13 AF111102.2 62965 158443 -
1666681 1825859 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 13 AF111103.1 1 159179 +
1825860 1875859 14 N 50000 contig no
1875860 2034273 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 15 - 15 AC005960.1 1 158414 +
2034274 2084273 16 N 50000 contig no
2084274 2238887 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 17 - 17 AL078630.1 1 154614 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1
mhc_129
AF110520
-
-
AF110520.1
finished
213245 - 3' / 5'
213245 / 50961
- / -
50959
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
2
mhc_129
AF100956
-
-
AF100956.1
finished
273800 - 3' / 5'
273800 / 22023
- / -
22022
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
3
mhc_129
AF027865
-
-
AF027865.1
finished
138187 - 3' / 5'
138187 / 24713
- / -
24712
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
4
mhc_129
AF050157
-
-
AF050157.1
finished
245439 - 3' / 5'
245439 / 577
- / -
576
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
5
mhc_129
AF030001
-
-
AF030001.1
finished
201964 - 3' / 5'
201960 / 89
4 / -
88
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
6
mhc_129
AF049850
-
-
AF049850.1
finished
149886 - 3' / 5'
149886 / 23781
- / -
23780
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
7
mhc_129
AF109906
-
-
AF109906.1
finished
158405 - 3' / 5'
158405 / 31838
- / -
31837
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
8
mhc_129
AF109905
-
-
AF109905.1
finished
135545 - 3' / 5'
135545 / 946
- / -
945
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
9
mhc_129
AF109719
-
-
AF109719.2
finished
120990 - 3' / 5'
119745 / 1
- / -
1245
0
Identified
2014-09-23
fetch_ncbi...
humpub
 
10
mhc_129
AC007080
-
-
AC007080.2
finished
39909 -        
  GAP (type-3) length unknown                  
12
mhc_129
AF111102
-
-
AF111102.2
finished
158443 - 5' / 5'
62965 / 1
58253 / -
4721
0.57
Identified
2008-07-03
find_overl...
humpub
 
13
mhc_129
AF111103
-
-
AF111103.1
finished
159179 -        
  GAP (type-3) length unknown                  
15
mhc_129
AC005960
-
-
AC005960.1
finished
158414 -        
  GAP (type-3) length unknown                  
17 CT7-573K1
mhc_129
Cl/Pr bP573K1/bM573K1 swap
EPN details
Submitted to EMBL
01-MAY-08
AL078630.1
finished
154614 CITB-CJ7-B        

Statistics

Clone Summary

Number of gaps
3
Gap types
type-3
3
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
160,885
Total finished length of fin clones w/ overlap
2,308,020
Total finished length of fin clones w/o overlap
2,147,135
Total overlap length of fin+unfin clones
160,885
Total finished length of fin+unfin clones w/ overlap
2,308,020
Total finished length of fin+unfin clones w/o overlap
2,147,135

Dovetails

# rank accession status length date
1 5 AF030001.1 unfinished 4 Tue, 23 Sep 2014 01:15
2 12 AF111102.2 unfinished 58,253 Tue, 23 Sep 2014 01:15

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