ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_DBB (TPF updated: 2008-09-10)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DADB-269D10
Hschr6_MHC_DBB_ctg1
bDB269D10
CR753905.3
finished
2 DADB-91F17
Hschr6_MHC_DBB_ctg1
bDB91F17
CR753651.10
finished
  GAP (type-2) length 107905 bps    
4 DADB-29N8
Hschr6_MHC_DBB_ctg1
bDB29N8
CR759835.5
finished
5 DADB-35C7
Hschr6_MHC_DBB_ctg1
bDB35C7
CR759827.2
finished
6 DADB-143G1
Hschr6_MHC_DBB_ctg1
bDB143G1
CR388407.3
finished
7 DADB-150K7
Hschr6_MHC_DBB_ctg1
bDB150K7
CR388415.2
finished
8 DADB-97P1
Hschr6_MHC_DBB_ctg1
bDB97P1
CR933537.3
finished
9 DADB-246O10
Hschr6_MHC_DBB_ctg1
bDB246O10
CR753509.3
finished
  GAP (type-2) length 17923 bps    
11 DADB-136A24
Hschr6_MHC_DBB_ctg1
bDB136A24
CR388393.8
finished
12 DADB-115L1
Hschr6_MHC_DBB_ctg1
bDB115L1
CR759770.3
finished
13 DADB-225M10
Hschr6_MHC_DBB_ctg1
bDB225M10
CR759870.6
finished
14 DADB-25P22
Hschr6_MHC_DBB_ctg1
bDB25P22
CR388408.5
finished
15 DADB-68M4
Hschr6_MHC_DBB_ctg1
bDB68M4
CR753818.5
finished
16 DADB-15K14
Hschr6_MHC_DBB_ctg1
bDB15K14
CR759769.4
finished
17 DADB-123D8
Hschr6_MHC_DBB_ctg1
bDB123D8
CR388220.8
finished
18 DADB-60O11
Hschr6_MHC_DBB_ctg1
bDB60O11
CR388205.7
finished
19 DADB-161G24
Hschr6_MHC_DBB_ctg1
bDB161G24
CR933538.3
finished
  GAP (type-2) length 6258 bps    
21 DADB-28I23
Hschr6_MHC_DBB_ctg1
bDB28I23
CR753815.3
finished
22 DADB-263K7
Hschr6_MHC_DBB_ctg1
bDB263K7
CT009499.2
finished
23 DADB-23P23
Hschr6_MHC_DBB_ctg1
bDB23P23
CR388382.5
finished
24 DADB-50B12
Hschr6_MHC_DBB_ctg1
bDB50B12
CR759281.4
finished
25 DADB-148B19
Hschr6_MHC_DBB_ctg1
bDB148B19
CR812479.6
finished
26 DADB-50G20
Hschr6_MHC_DBB_ctg1
bDB50G20
CR762481.6
finished
27 DADB-87H23
Hschr6_MHC_DBB_ctg1
bDB87H23
CR388372.6
finished
  GAP (type-2) length 510 bps    
29 DADB-129D20
Hschr6_MHC_DBB_ctg1
bDB129D20
CR753328.11
finished
30 DADB-118P11
Hschr6_MHC_DBB_ctg1
bDB118P11
CR936878.10
finished
31 DADB-91G1
Hschr6_MHC_DBB_ctg1
bDB91G1
CR388215.10
finished
  GAP (type-2) length 2518 bps    
33 DADB-32E8
Hschr6_MHC_DBB_ctg1
bDB32E8
CR753093.2
finished
34 DADB-160J14
Hschr6_MHC_DBB_ctg1
bDB160J14
CR759747.7
finished
35 DADB-333N9
Hschr6_MHC_DBB_ctg1
bDB333N9
CR762495.5
finished
36 DADB-72G6
Hschr6_MHC_DBB_ctg1
bDB72G6
CR753812.3
finished
37 DADB-349N3
Hschr6_MHC_DBB_ctg1
bDB349N3
CR847993.4
finished
38 DADB-141O4
Hschr6_MHC_DBB_ctg1
bDB141O4
CR753819.5
finished
39 DADB-104B20
Hschr6_MHC_DBB_ctg1
bDB104B20
CR388229.14
finished
40 DADB-15N24
Hschr6_MHC_DBB_ctg1
bDB15N24
CR759814.6
finished
  GAP (type-2) length 117358 bps    
42 DADB-26I14
Hschr6_MHC_DBB_ctg1
bDB26I14
CR753820.15
finished
43 DADB-70P7
Hschr6_MHC_DBB_ctg1
bDB70P7
CR753892.5
finished
44 DADB-127H9
Hschr6_MHC_DBB_ctg1
bDB127H9
CR753842.3
finished
45 DADB-110M10
Hschr6_MHC_DBB_ctg1
bDB110M10
CR936239.2
finished
46 DADB-149K5
Hschr6_MHC_DBB_ctg1
bDB149K5
CR925765.2
finished
47 DADB-333F21
Hschr6_MHC_DBB_ctg1
bDB333F21
CR388202.9
finished
48 DADB-122G4
Hschr6_MHC_DBB_ctg1
bDB122G4
CR388219.12
finished
49 DADB-112B14
Hschr6_MHC_DBB_ctg1
bDB112B14
CR753845.11
finished
50 DADB-220I18
Hschr6_MHC_DBB_ctg1
bDB220I18
CR753803.4
finished
  GAP (type-2) length 74304 bps    
52 DADB-285H20
Hschr6_MHC_DBB_ctg1
bDB285H20
CR759737.4
finished
53 DADB-341G19
Hschr6_MHC_DBB_ctg1
bDB341G19
CR751604.3
finished
54 DADB-254M3
Hschr6_MHC_DBB_ctg1
bDB254M3
CR752644.6
finished
55 XX-BDB254M3_BDB70I23
Hschr6_MHC_DBB_ctg1
BDB254M3_BDB70I23
CU019529.1
finished
56 DADB-70I23
Hschr6_MHC_DBB_ctg1
bDB70I23
CR753634.3
finished
57 DADB-165L10
Hschr6_MHC_DBB_ctg1
bDB165L10
CR759837.3
finished
  GAP (type-2) length 36228 bps    
59 DADB-102D7
Hschr6_MHC_DBB_ctg1
bDB102D7
CR753841.3
finished
60 DADB-102D14
Hschr6_MHC_DBB_ctg1
bDB102D14
CR753309.2
finished
61 DADB-249P12
Hschr6_MHC_DBB_ctg1
bDB249P12
CR753846.4
finished
62 DADB-156N11
Hschr6_MHC_DBB_ctg1
bDB156N11
CR788227.4
finished
63 DADB-78A10
Hschr6_MHC_DBB_ctg1
bDB78A10
CR753889.4
finished
64 DADB-223G19
Hschr6_MHC_DBB_ctg1
bDB223G19
CR752645.3
finished
  GAP (type-2) length 20422 bps    
66 DADB-17J1
Hschr6_MHC_DBB_ctg1
bDB17J1
CR759829.6
finished
67 DADB-22N23
Hschr6_MHC_DBB_ctg1
bDB22N23
CR762479.5
finished
  GAP (type-2) length 22668 bps    
69 DADB-100D22
Hschr6_MHC_DBB_ctg1
bDB100D22
CR759733.4
finished
70 DADB-91M20
Hschr6_MHC_DBB_ctg1
bDB91M20
CR762434.7
finished
71 DADB-159G18
Hschr6_MHC_DBB_ctg1
bDB159G18
CR759817.3
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 2302 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR753905.3 1 2302 +
2303 124766 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR753651.10 2001 124464 +
124767 232671 3 N 107905 contig yes
232672 308069 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 9 CR759835.5 1 75398 +
308070 310417 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 9 CR759827.2 2001 4348 +
310418 351001 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 9 CR388407.3 2001 42584 +
351002 451197 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 9 CR388415.2 2001 102196 +
451198 483628 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 9 CR933537.3 2001 34431 +
483629 609168 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 9 CR753509.3 2001 127540 +
609169 627091 10 N 17923 contig yes
627092 786457 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR388393.8 1 159366 +
786458 837007 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR759770.3 2001 52550 +
837008 892750 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR759870.6 2001 57743 +
892751 970075 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR388408.5 2001 79325 +
970076 1005908 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR753818.5 2001 37833 +
1005909 1092320 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR759769.4 2001 88412 +
1092321 1221687 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR388220.8 2002 131368 +
1221688 1322730 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR388205.7 428 101470 +
1322731 1324572 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 19 CR933538.3 2001 3842 +
1324573 1330830 20 N 6258 contig yes
1330831 1409762 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CR753815.3 1 78932 +
1409763 1411345 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CT009499.2 2001 3583 +
1411346 1518412 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CR388382.5 2001 109067 +
1518413 1623432 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CR759281.4 2001 107020 +
1623433 1686536 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CR812479.6 2001 65104 +
1686537 1754953 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CR762481.6 2001 70417 +
1754954 1823401 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 21 - 27 CR388372.6 2001 70448 +
1823402 1823911 28 N 510 contig yes
1823912 1929046 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR753328.11 1 105135 +
1929047 1993262 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR936878.10 2001 66216 +
1993263 2104006 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 31 CR388215.10 2001 112744 +
2104007 2106524 32 N 2518 contig yes
2106525 2134796 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR753093.2 1 28272 +
2134797 2247679 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR759747.7 2001 114883 +
2247680 2280975 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR762495.5 2001 35296 +
2280976 2313468 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR753812.3 2001 34493 +
2313469 2332392 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR847993.4 2001 20924 +
2332393 2411810 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR753819.5 2001 81418 +
2411811 2531469 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR388229.14 2001 121659 +
2531470 2592968 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 40 CR759814.6 2001 63499 +
2592969 2710326 41 N 117358 contig yes
2710327 2785177 42 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR753820.15 1 74851 +
2785178 2884599 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR753892.5 2001 101422 +
2884600 2951612 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR753842.3 2001 69013 +
2951613 2992993 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR936239.2 2001 43381 +
2992994 3048990 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR925765.2 2001 57997 +
3048991 3127354 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR388202.9 2001 80364 +
3127355 3196944 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR388219.12 2001 71590 +
3196945 3291034 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR753845.11 2001 96090 +
3291035 3393711 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 42 - 50 CR753803.4 2001 104677 +
3393712 3468015 51 N 74304 contig yes
3468016 3551540 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 57 CR759737.4 1 83525 +
3551541 3568976 53 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 57 CR751604.3 2001 19436 +
3568977 3634107 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 57 CR752644.6 2001 67131 +
3634108 3634948 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 57 CU019529.1 213 1053 +
3634949 3713295 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 57 CR753634.3 126 78472 +
3713296 3723097 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 57 CR759837.3 2001 11802 +
3723098 3759325 58 N 36228 contig yes
3759326 3767130 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR753841.3 1 7805 +
3767131 3873028 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR753309.2 2001 107898 +
3873029 3999077 61 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR753846.4 2001 128049 +
3999078 4054151 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR788227.4 2001 57074 +
4054152 4099697 63 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR753889.4 2001 47546 +
4099698 4193253 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 64 CR752645.3 2001 95556 +
4193254 4213675 65 N 20422 contig yes
4213676 4306967 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 67 CR759829.6 1 93292 +
4306968 4340837 67 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 67 CR762479.5 2001 35870 +
4340838 4363505 68 N 22668 contig yes
4363506 4467710 69 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR759733.4 1 104205 +
4467711 4490205 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR762434.7 2001 24495 +
4490206 4597107 71 FClick to retrieve finished assembled sequence in green bar: rank(s) 69 - 71 CR759817.3 2001 108902 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
10
Gap types
type-2
10
Total clones
61
Clone HTGS Phases
finished
61
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
94,764
Total finished length of fin clones w/ overlap
4,285,778
Total finished length of fin clones w/o overlap
4,191,014
Total overlap length of fin+unfin clones
94,764
Total finished length of fin+unfin clones w/ overlap
4,285,778
Total finished length of fin+unfin clones w/o overlap
4,191,014

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Other links

* quick link - http://q.sanger.ac.uk/0pbp99t1