ChromoView - clone / Assembly sequencing status

Human: Sub region MHC_APD (TPF updated: 2008-09-10)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 DAAP-101P24
Hschr6_MHC_APD_ctg1
bAP101P24
CR759954.9
finished
2 DAAP-182E11
Hschr6_MHC_APD_ctg1
bAP182E11
CR759942.12
finished
  GAP (type-2) length 44253 bps    
4 DAAP-223O5
Hschr6_MHC_APD_ctg1
bAP223O5
CR759957.2
finished
  GAP (type-2) length 29384 bps    
6 DAAP-334J16
Hschr6_MHC_APD_ctg1
bAP334J16
CR942175.3
finished
7 DAAP-270H14
Hschr6_MHC_APD_ctg1
bAP270H14
CR774181.3
finished
  GAP (type-2) length 87598 bps    
9 DAAP-191E6
Hschr6_MHC_APD_ctg1
bAP191E6
CR936918.2
finished
  GAP (type-2) length 104192 bps    
11 DAAP-34I1
Hschr6_MHC_APD_ctg1
bAP34I1
CR848056.4
finished
12 DAAP-341G9
Hschr6_MHC_APD_ctg1
bAP341G9
CR759956.2
finished
13 DAAP-188P13
Hschr6_MHC_APD_ctg1
bAP188P13
CR788300.6
finished
14 DAAP-35D11
Hschr6_MHC_APD_ctg1
bAP35D11
CR936483.10
finished
  GAP (type-2) length 19123 bps    
16 DAAP-87K10
Hschr6_MHC_APD_ctg1
bAP87K10
CR762489.4
finished
  GAP (type-2) length 59377 bps    
18 DAAP-84C21
Hschr6_MHC_APD_ctg1
bAP84C21
CR925767.6
finished
19 XX-BAP84C21_BAP349F14
Hschr6_MHC_APD_ctg1
BAP84C21_BAP349F14
CU019528.1
finished
20 DAAP-349F14
Hschr6_MHC_APD_ctg1
bAP349F14
CT009496.3
finished
21 DAAP-388C10
Hschr6_MHC_APD_ctg1
bAP388C10
CR759913.4
finished
  GAP (type-2) length 24594 bps    
23 DAAP-21A6
Hschr6_MHC_APD_ctg1
bAP21A6
CR759943.6
finished
24 DAAP-65D20
Hschr6_MHC_APD_ctg1
bAP65D20
CR759960.3
finished
  GAP (type-2) length 9746 bps    
26 DAAP-112O13
Hschr6_MHC_APD_ctg1
bAP112O13
CR925727.3
finished
  GAP (type-2) length 2931 bps    
28 DAAP-200B17
Hschr6_MHC_APD_ctg1
bAP200B17
CR788282.3
finished
29 DAAP-384I23
Hschr6_MHC_APD_ctg1
bAP384I23
CT009520.5
finished
  GAP (type-2) length 104591 bps    
31 DAAP-374K6
Hschr6_MHC_APD_ctg1
bAP374K6
CT009538.5
finished
  GAP (type-2) length 16440 bps    
33 DAAP-385L22
Hschr6_MHC_APD_ctg1
bAP385L22
CR759928.10
finished
34 DAAP-56K16
Hschr6_MHC_APD_ctg1
bAP56K16
CR759890.6
finished
35 DAAP-334P6
Hschr6_MHC_APD_ctg1
bAP334P6
CR774188.4
finished
  GAP (type-2) length 49753 bps    
37 DAAP-394O23
Hschr6_MHC_APD_ctg1
bAP394O23
CR759912.6
finished
  GAP (type-2) length 103871 bps    
39 DAAP-285E11
Hschr6_MHC_APD_ctg1
bAP285E11
CR759873.4
finished
  GAP (type-2) length 154558 bps    
41 DAAP-278B20
Hschr6_MHC_APD_ctg1
bAP278B20
CR936908.2
finished
  GAP (type-2) length 85167 bps    
43 DAAP-280C10
Hschr6_MHC_APD_ctg1
bAP280C10
CR759911.5
finished
44 DAAP-223I5
Hschr6_MHC_APD_ctg1
bAP223I5
CR759964.5
finished
45 DAAP-143K21
Hschr6_MHC_APD_ctg1
bAP143K21
CT009481.4
finished
46 DAAP-319K1
Hschr6_MHC_APD_ctg1
bAP319K1
CR762477.4
finished
  GAP (type-2) length 401260 bps    
48 DAAP-210H10
Hschr6_MHC_APD_ctg1
bAP210H10
CR788288.6
finished
49 DAAP-97M17
Hschr6_MHC_APD_ctg1
bAP97M17
CT009531.8
finished
  GAP (type-2) length 36752 bps    
51 DAAP-90L16
Hschr6_MHC_APD_ctg1
bAP90L16
CR759886.7
finished
52 DAAP-300H15
Hschr6_MHC_APD_ctg1
bAP300H15
CR759905.4
finished
  GAP (type-2) length 142825 bps    
54 DAAP-21F2
Hschr6_MHC_APD_ctg1
bAP21F2
CR759915.6
finished
  GAP (type-2) length 13507 bps    
56 DAAP-222I20
Hschr6_MHC_APD_ctg1
bAP222I20
CR942273.7
finished
57 DAAP-66K18
Hschr6_MHC_APD_ctg1
bAP66K18
CR936237.6
finished
  GAP (type-2) length 174972 bps    
59 DAAP-193O6
Hschr6_MHC_APD_ctg1
bAP193O6
CR936919.4
finished
60 DAAP-344N11
Hschr6_MHC_APD_ctg1
bAP344N11
CT010586.5
finished
  GAP (type-2) length 45267 bps    
62 DAAP-218M18
Hschr6_MHC_APD_ctg1
bAP218M18
CR812478.6
finished
  GAP (type-2) length 103035 bps    
64 DAAP-279L6
Hschr6_MHC_APD_ctg1
bAP279L6
CT009614.5
finished
  GAP (type-2) length 3653 bps    
66 DAAP-282D22
Hschr6_MHC_APD_ctg1
bAP282D22
CR759917.3
finished
  GAP (type-2) length 39571 bps    
68 DAAP-380K20
Hschr6_MHC_APD_ctg1
bAP380K20
CR759919.3
finished
  GAP (type-2) length 3322 bps    
70 DAAP-349F20
Hschr6_MHC_APD_ctg1
bAP349F20
CR788283.2
finished
  GAP (type-2) length 180236 bps    
72 DAAP-381D23
Hschr6_MHC_APD_ctg1
bAP381D23
CR936921.7
finished
73 DAAP-57C1
Hschr6_MHC_APD_ctg1
bAP57C1
CR762476.2
finished
74 DAAP-27A1
Hschr6_MHC_APD_ctg1
bAP27A1
CR936913.7
finished
  GAP (type-2) length 53709 bps    
76 DAAP-277G18
Hschr6_MHC_APD_ctg1
bAP277G18
CR759904.5
finished
77 DAAP-90E5
Hschr6_MHC_APD_ctg1
bAP90E5
CT009497.8
finished
  GAP (type-2) length 207856 bps    
79 DAAP-220E17
Hschr6_MHC_APD_ctg1
bAP220E17
CT009514.7
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 94061 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR759954.9 1 94061 +
94062 161483 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR759942.12 2001 69422 +
161484 205736 3 N 44253 contig yes
205737 280750 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 4 CR759957.2 1 75014 +
280751 310134 5 N 29384 contig yes
310135 351469 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 CR942175.3 1 41335 +
351470 402250 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 6 - 7 CR774181.3 2000 52780 +
402251 489848 8 N 87598 contig yes
489849 542437 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 CR936918.2 1 52589 +
542438 646629 10 N 104192 contig yes
646630 675156 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 14 CR848056.4 1 28527 +
675157 754236 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 14 CR759956.2 2001 81080 +
754237 832475 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 14 CR788300.6 670 78908 +
832476 898111 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 14 CR936483.10 1997 67632 +
898112 917234 15 N 19123 contig yes
917235 923716 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CR762489.4 1 6482 +
923717 983093 17 N 59377 contig yes
983094 1095638 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CR925767.6 1 112545 +
1095639 1096668 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CU019528.1 661 1690 +
1096669 1119565 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CT009496.3 90 22986 +
1119566 1183288 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 21 CR759913.4 4308 68030 +
1183289 1207882 22 N 24594 contig yes
1207883 1222198 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 24 CR759943.6 1 14316 +
1222199 1317305 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 24 CR759960.3 2001 97107 +
1317306 1327051 25 N 9746 contig yes
1327052 1350562 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 CR925727.3 1 23511 +
1350563 1353493 27 N 2931 contig yes
1353494 1432320 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 CR788282.3 1 78827 +
1432321 1460935 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 29 CT009520.5 2001 30615 +
1460936 1565526 30 N 104591 contig yes
1565527 1591903 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CT009538.5 1 26377 +
1591904 1608343 32 N 16440 contig yes
1608344 1648106 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR759928.10 1 39763 +
1648107 1735530 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR759890.6 2001 89424 +
1735531 1745950 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 35 CR774188.4 2001 12420 +
1745951 1795703 36 N 49753 contig yes
1795704 1843165 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 37 CR759912.6 1 47462 +
1843166 1947036 38 N 103871 contig yes
1947037 2019276 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 39 - 39 CR759873.4 1 72240 +
2019277 2173834 40 N 154558 contig yes
2173835 2178356 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 CR936908.2 1 4522 +
2178357 2263523 42 N 85167 contig yes
2263524 2269147 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 CR759911.5 1 5624 +
2269148 2349985 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 CR759964.5 2001 82838 +
2349986 2361058 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 CT009481.4 2001 13073 +
2361059 2369328 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 46 CR762477.4 2001 10270 +
2369329 2770588 47 N 401260 contig yes
2770589 2808996 48 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 CR788288.6 1 38408 +
2808997 2831033 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 48 - 49 CT009531.8 2001 24037 +
2831034 2867785 50 N 36752 contig yes
2867786 2883782 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 CR759886.7 1 15997 +
2883783 2904011 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 52 CR759905.4 1912 22140 +
2904012 3046836 53 N 142825 contig yes
3046837 3132327 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CR759915.6 1 85491 +
3132328 3145834 55 N 13507 contig yes
3145835 3150605 56 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 CR942273.7 1 4771 +
3150606 3189677 57 FClick to retrieve finished assembled sequence in green bar: rank(s) 56 - 57 CR936237.6 1835 40906 +
3189678 3364649 58 N 174972 contig yes
3364650 3378992 59 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 60 CR936919.4 1 14343 +
3378993 3379533 60 FClick to retrieve finished assembled sequence in green bar: rank(s) 59 - 60 CT010586.5 1996 2536 +
3379534 3424800 61 N 45267 contig yes
3424801 3500420 62 FClick to retrieve finished assembled sequence in green bar: rank(s) 62 - 62 CR812478.6 1 75620 +
3500421 3603455 63 N 103035 contig yes
3603456 3648021 64 FClick to retrieve finished assembled sequence in green bar: rank(s) 64 - 64 CT009614.5 1 44566 +
3648022 3651674 65 N 3653 contig yes
3651675 3705977 66 FClick to retrieve finished assembled sequence in green bar: rank(s) 66 - 66 CR759917.3 1 54303 +
3705978 3745548 67 N 39571 contig yes
3745549 3772224 68 FClick to retrieve finished assembled sequence in green bar: rank(s) 68 - 68 CR759919.3 1 26676 +
3772225 3775546 69 N 3322 contig yes
3775547 3799720 70 FClick to retrieve finished assembled sequence in green bar: rank(s) 70 - 70 CR788283.2 1 24174 +
3799721 3979956 71 N 180236 contig yes
3979957 4038359 72 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 74 CR936921.7 1 58403 +
4038360 4131913 73 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 74 CR762476.2 2001 95554 +
4131914 4229821 74 FClick to retrieve finished assembled sequence in green bar: rank(s) 72 - 74 CR936913.7 2001 99908 +
4229822 4283530 75 N 53709 contig yes
4283531 4370010 76 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 CR759904.5 1 86480 +
4370011 4399383 77 FClick to retrieve finished assembled sequence in green bar: rank(s) 76 - 77 CT009497.8 33831 63203 +
4399384 4607239 78 N 207856 contig yes
4607240 4631644 79 FClick to retrieve finished assembled sequence in green bar: rank(s) 79 - 79 CT009514.7 1 24405 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
28
Gap types
type-2
28
Total clones
51
Clone HTGS Phases
finished
51
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
73,290
Total finished length of fin clones w/ overlap
2,403,391
Total finished length of fin clones w/o overlap
2,330,101
Total overlap length of fin+unfin clones
73,290
Total finished length of fin+unfin clones w/ overlap
2,403,391
Total finished length of fin+unfin clones w/o overlap
2,330,101

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Other links

* quick link - http://q.sanger.ac.uk/1p19ren7