ChromoView - clone / Assembly sequencing status

Mouse: Sub region chr5_steel (TPF updated: 2005-07-20)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-240B12
chr5_steel
bM240B12
AC122282.5
finished
2 RP24-291I7
chr5_steel
bN291I7
AC127255.4
finished
3 RP24-360K9
chr5_steel
bN360K9
AC132102.3
finished
4 RP23-345O14
chr5_steel
bM345O14
AC124228.16
finished
5 RP23-3M10
chr5_steel
bM3M10
AC087330.6
finished
6 RP24-297N9
chr5_steel
bN297N9
AC116500.13
finished
7 RP24-556H22
chr5_steel
bN556H22
AC117799.9
finished
8 RP24-188M1
chr5_steel
bN188M1
AC119205.8
finished
9 RP23-41I11
chr5_steel
bM41I11
AC145070.10
finished
10 RP24-132L16
chr5_steel
bN132L16
AC117735.8
finished
11 RP23-228F6
chr5_steel
bM228F6
AC159539.6
finished
12 RP24-180G11
chr5_steel
bN180G11
AC139562.8
finished
13 RP23-265I19
chr5_steel
bM265I19
AC162461.6
finished
14 RP23-400O10
chr5_steel
bM400O10
AC115795.11
finished
15 RP24-486F14
chr5_steel
bN486F14
AC119977.18
finished
16 RP24-151L11
chr5_steel
bN151L11
AC158756.4
finished
17 RP24-79A6
chr5_steel
bN79A6
AC115972.13
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 227388 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC122282.5 1 227388 +
227389 249206 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC127255.4 1 21818 -
249207 388018 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC132102.3 1 138812 -
388019 537933 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC124228.16 1 149915 -
537934 700334 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC087330.6 43686 206086 +
700335 846120 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC116500.13 31904 177689 +
846121 922705 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC117799.9 102365 178949 +
922706 1060368 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC119205.8 1 137663 -
1060369 1195089 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC145070.10 1 134721 -
1195090 1353746 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC117735.8 1 158657 -
1353747 1548389 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC159539.6 43957 238599 +
1548390 1641509 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC139562.8 75039 168158 +
1641510 1818902 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC162461.6 56240 233632 +
1818903 2001459 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC115795.11 24547 207103 +
2001460 2100647 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC119977.18 1 99188 -
2100648 2163319 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC158756.4 85187 147858 +
2163320 2341440 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 17 AC115972.13 1 178121 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-240B12
chr5_steel
bM240B12
-
-
AC122282.5
finished
227388 RPCI-23 3' / 3'
227388 / 21818
- / -
131674
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
2 RP24-291I7
chr5_steel
bN291I7
-
-
AC127255.4
finished
153492 RPCI-24 5' / 3'
1 / 138812
- / -
5733
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
3 RP24-360K9
chr5_steel
bN360K9
-
-
AC132102.3
finished
144545 RPCI-24 5' / 3'
1 / 149915
- / -
69327
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
4 RP23-345O14
chr5_steel
bM345O14
-
-
AC124228.16
finished
219244 RPCI-23 5' / 5'
1 / 43686
- / -
43685
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
5 RP23-3M10
chr5_steel
bM3M10
-
-
AC087330.6
finished
206093 RPCI-23 3' / 5'
206086 / 31904
7 / -
31903
0.02
Identified
2014-10-22
fetch_ncbi...
humpub
 
6 RP24-297N9
chr5_steel
bN297N9
-
-
AC116500.13
finished
177689 RPCI-24 3' / 5'
177689 / 102365
- / -
102364
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
7 RP24-556H22
chr5_steel
bN556H22
-
-
AC117799.9
finished
178949 RPCI-24 3' / 3'
178949 / 137663
- / -
32887
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
8 RP24-188M1
chr5_steel
bN188M1
-
-
AC119205.8
finished
170550 RPCI-24 5' / 3'
1 / 134721
- / -
45392
0.01
Identified
2014-10-22
fetch_ncbi...
humpub
 
9 RP23-41I11
chr5_steel
bM41I11
-
-
AC145070.10
finished
180113 RPCI-23 5' / 3'
1 / 158657
- / -
25204
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
10 RP24-132L16
chr5_steel
bN132L16
-
-
AC117735.8
finished
183861 RPCI-24 5' / 5'
1 / 43957
- / -
43956
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
11 RP23-228F6
chr5_steel
bM228F6
-
-
AC159539.6
finished
238599 RPCI-23 3' / 5'
238599 / 75039
- / -
75038
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
12 RP24-180G11
chr5_steel
bN180G11
-
-
AC139562.8
finished
168158 RPCI-24 3' / 5'
168158 / 56240
- / -
56238
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
13 RP23-265I19
chr5_steel
bM265I19
-
-
AC162461.6
finished
233632 RPCI-23 3' / 5'
233632 / 24547
- / -
24546
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
14 RP23-400O10
chr5_steel
bM400O10
-
-
AC115795.11
finished
207103 RPCI-23 3' / 3'
207103 / 99188
- / -
52391
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
15 RP24-486F14
chr5_steel
bN486F14
-
-
AC119977.18
finished
151580 RPCI-24 5' / 5'
1 / 85187
- / -
85186
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
16 RP24-151L11
chr5_steel
bN151L11
-
-
AC158756.4
finished
147858 RPCI-24 3' / 3'
147858 / 178121
- / -
57807
0
Identified
2014-10-22
fetch_ncbi...
humpub
 
17 RP24-79A6
chr5_steel
bN79A6
-
-
AC115972.13
finished
235928 RPCI-24        

Statistics

Clone Summary

Number of gaps
0
Total clones
17
Clone HTGS Phases
finished
17
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
883,331
Total finished length of fin clones w/ overlap
3,224,782
Total finished length of fin clones w/o overlap
2,341,451
Total overlap length of fin+unfin clones
883,331
Total finished length of fin+unfin clones w/ overlap
3,224,782
Total finished length of fin+unfin clones w/o overlap
2,341,451

Dovetails

# rank accession status length date
1 5 AC087330.6 unfinished 7 Wed, 22 Oct 2014 00:45

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