ChromoView - clone / Assembly sequencing status

Mouse: Sub region chr6_steel (TPF updated: 2005-10-05)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP23-75J13
chr6_steel
bM75J13
AC069469.5
finished
2 RP23-353E8
chr6_steel
bM353E8
AC079216.4
finished
3 RP23-459D9
chr6_steel
bM459D9
AC134897.4
finished
4 RP23-450O1
chr6_steel
bM450O1
AC153632.2
finished
5 RP23-1D15
chr6_steel
bM1D15
AC161538.7
finished
6 RP23-384N6
chr6_steel
bM384N6
AC160148.7
finished
7 RP24-534P19
chr6_steel
bN534P19
AC155848.6
finished
8 RP24-67I3
chr6_steel
bN67I3
AC155656.10
finished
9 RP24-211G11
chr6_steel
bN211G11
AC146699.5
finished
  GAP (type-3) length 100000 bps    
11 RP23-430F24
chr6_steel
bM430F24
AC121800.2
finished
12 RP23-459L15
chr6_steel
bM459L15
AC153820.4
finished
13 RP23-402K12
chr6_steel
bM402K12
AC024913.33
finished
14 RP23-400L4
chr6_steel
bM400L4
AC158658.4
finished
15 RP24-286A19
chr6_steel
bN286A19
AC132305.3
finished
16 RP23-192D5
chr6_steel
bM192D5
AC153837.4
finished
17 RP24-414G20
chr6_steel
bN414G20
AC166178.10
finished
18 RP24-538P5
chr6_steel
bN538P5
AC166040.3
finished
19 RP23-296F15
chr6_steel
bM296F15
AC153796.1
finished
20 RP24-158J4
chr6_steel
bN158J4
AC155847.3
finished
21 RP23-462O13
chr6_steel
bM462O13
AC153629.3
finished
22 RP23-400K22
chr6_steel
bM400K22
AC153867.3
finished
23 RP23-289O16
chr6_steel
bM289O16
AC153630.1
finished
24 RP23-142I6
chr6_steel
bM142I6
AC158678.6
finished
25 RP23-260M5
chr6_steel
bM260M5
AC153841.1
finished
26 RP23-225G5
chr6_steel
bM225G5
AC152943.1
finished
27 RP24-246G10
chr6_steel
bN246G10
AC156288.5
finished
28 RP23-438F8
chr6_steel
bM438F8
AC164524.5
finished
29 RP24-113L15
chr6_steel
bN113L15
AC155657.8
finished
30 RP23-200J18
chr6_steel
bM200J18
AC132453.3
finished
31 RP23-4H14
chr6_steel
bM4H14
AC152961.2
finished
32 RP23-237F16
chr6_steel
bM237F16
AC141927.3
finished
33 RP24-365C10
chr6_steel
bN365C10
AC154020.3
finished
34 RP24-462N21
chr6_steel
bN462N21
AC155915.2
finished
35 RP23-11P24
chr6_steel
bM11P24
AC153817.6
finished
36 RP23-15E20
chr6_steel
bM15E20
AC164578.5
finished
37 RP23-83K15
chr6_steel
bM83K15
AC115767.14
finished
38 RP23-103K17
chr6_steel
bM103K17
AC152976.1
finished
39 RP23-296I18
chr6_steel
bM296I18
AC102668.12
finished
40 RP23-104H13
chr6_steel
bM104H13
AC153627.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 172786 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC069469.5 1 172786 +
172787 360946 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC079216.4 33589 221748 +
360947 456815 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC134897.4 1 95869 -
456816 543455 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC153632.2 1 86640 -
543456 675881 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC161538.7 1 132426 -
675882 750755 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC160148.7 1 74874 -
750756 923026 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC155848.6 1 172271 -
923027 1071091 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC155656.10 14054 162118 +
1071092 1118408 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC146699.5 1 47317 -
1118409 1218408 10 N 100000 contig no
1218409 1406720 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC121800.2 1 188312 -
1406721 1549306 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153820.4 1 142586 -
1549307 1604608 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC024913.33 142530 197831 +
1604609 1784701 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC158658.4 17817 197909 +
1784702 1855915 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC132305.3 1 71214 -
1855916 2030700 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153837.4 1 174785 -
2030701 2150971 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC166178.10 1 120271 -
2150972 2320921 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC166040.3 30898 200847 +
2320922 2426630 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153796.1 1 105709 -
2426631 2513676 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC155847.3 1 87046 -
2513677 2682233 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153629.3 8638 177194 +
2682234 2702428 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153867.3 33498 53692 +
2702429 2788075 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153630.1 1 85647 +
2788076 3005661 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC158678.6 1 217586 -
3005662 3121060 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153841.1 75143 190541 +
3121061 3316909 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC152943.1 1 195849 -
3316910 3433988 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC156288.5 49845 166923 +
3433989 3497842 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC164524.5 117084 180937 +
3497843 3603888 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC155657.8 1 106046 -
3603889 3761155 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC132453.3 1 157267 -
3761156 3933683 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC152961.2 54940 227467 +
3933684 4056852 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC141927.3 1 123169 -
4056853 4229578 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC154020.3 256 172981 +
4229579 4369253 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC155915.2 1 139675 -
4369254 4565010 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153817.6 51752 247508 +
4565011 4691941 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC164578.5 98634 225564 +
4691942 4927245 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC115767.14 22487 257790 +
4927246 4927245 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC152976.1 104238 68265 -
4927246 4932245 39 N 5000 contig no
4932246 5118733 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 41 AC102668.12 1 186488 -
5118734 5239767 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 41 AC153627.2 1 121034 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP23-75J13
chr6_steel
bM75J13
-
-
AC069469.5
finished
172786 RPCI-23 3' / 5'
172786 / 33589
- / -
33588
0
Identified
2014-11-12
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2 RP23-353E8
chr6_steel
bM353E8
-
-
AC079216.4
finished
221748 RPCI-23 3' / 3'
221748 / 95869
- / -
77705
0
Identified
2014-11-12
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3 RP23-459D9
chr6_steel
bM459D9
-
-
AC134897.4
finished
173574 RPCI-23 5' / 3'
1 / 86640
- / -
95864
0.01
Identified
2014-11-12
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4 RP23-450O1
chr6_steel
bM450O1
-
-
AC153632.2
finished
182517 RPCI-23 5' / 3'
1 / 132426
- / -
79505
0
Identified
2014-11-12
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5 RP23-1D15
chr6_steel
bM1D15
-
-
AC161538.7
finished
211933 RPCI-23 5' / 3'
1 / 74874
- / -
132427
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
6 RP23-384N6
chr6_steel
bM384N6
-
-
AC160148.7
finished
207306 RPCI-23 5' / 3'
1 / 172271
- / -
30386
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
7 RP24-534P19
chr6_steel
bN534P19
-
-
AC155848.6
finished
202657 RPCI-24 5' / 5'
1 / 14054
- / -
14053
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
8 RP24-67I3
chr6_steel
bN67I3
-
-
AC155656.10
finished
162118 RPCI-24 3' / 3'
162118 / 47317
- / -
39584
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
9 RP24-211G11
chr6_steel
bN211G11
-
-
AC146699.5
finished
86901 RPCI-24        
  GAP (type-3) length 100000 bps                  
11 RP23-430F24
chr6_steel
bM430F24
-
-
AC121800.2
finished
188312 RPCI-23 5' / 3'
1 / 142586
- / -
38410
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
12 RP23-459L15
chr6_steel
bM459L15
-
-
AC153820.4
finished
180996 RPCI-23 5' / 5'
1 / 142530
- / 7
142519
0.06
Identified
2014-11-12
fetch_ncbi...
humpub
 
13 RP23-402K12
chr6_steel
bM402K12
-
-
AC024913.33
finished
197831 RPCI-23 3' / 5'
197831 / 17817
- / -
17816
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
14 RP23-400L4
chr6_steel
bM400L4
-
-
AC158658.4
finished
197909 RPCI-23 3' / 3'
197909 / 71214
- / -
116251
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
15 RP24-286A19
chr6_steel
bN286A19
-
-
AC132305.3
finished
187465 RPCI-24 5' / 3'
1 / 174785
- / -
57254
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
16 RP23-192D5
chr6_steel
bM192D5
-
-
AC153837.4
finished
232039 RPCI-23 5' / 3'
1 / 120271
- / -
52736
0.03
Identified
2014-11-12
fetch_ncbi...
humpub
 
17 RP24-414G20
chr6_steel
bN414G20
-
-
AC166178.10
finished
173015 RPCI-24 5' / 5'
1 / 30898
- / -
30845
0.17
Identified
2014-11-12
fetch_ncbi...
humpub
 
18 RP24-538P5
chr6_steel
bN538P5
-
-
AC166040.3
finished
200847 RPCI-24 3' / 3'
200847 / 105709
- / -
60266
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
19 RP23-296F15
chr6_steel
bM296F15
-
-
AC153796.1
finished
165975 RPCI-23 5' / 3'
1 / 87046
- / -
64125
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
20 RP24-158J4
chr6_steel
bN158J4
-
-
AC155847.3
finished
151171 RPCI-24 5' / 5'
1 / 8638
- / -
8637
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
21 RP23-462O13
chr6_steel
bM462O13
-
-
AC153629.3
finished
177194 RPCI-23 3' / 5'
177194 / 33498
- / -
33497
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
22 RP23-400K22
chr6_steel
bM400K22
-
-
AC153867.3
finished
196838 RPCI-23 3' / 5'
53692 / 1
- / -
143148
0
Identified
2008-07-03
find_overl...
humpub
 
23 RP23-289O16
chr6_steel
bM289O16
-
-
AC153630.1
finished
217496 RPCI-23 3' / 3'
85647 / 217586
- / -
131854
0
Identified
2008-07-03
find_overl...
humpub
 
24 RP23-142I6
chr6_steel
bM142I6
-
-
AC158678.6
finished
217586 RPCI-23 5' / 5'
1 / 75143
- / -
75142
0.01
Identified
2014-11-12
fetch_ncbi...
humpub
 
25 RP23-260M5
chr6_steel
bM260M5
-
-
AC153841.1
finished
190541 RPCI-23 3' / 3'
190541 / 195849
- / -
2643
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
26 RP23-225G5
chr6_steel
bM225G5
-
-
AC152943.1
finished
198492 RPCI-23 5' / 5'
1 / 49845
- / -
49808
0.07
Identified
2014-11-12
fetch_ncbi...
humpub
 
27 RP24-246G10
chr6_steel
bN246G10
-
-
AC156288.5
finished
166923 RPCI-24 3' / 5'
166923 / 117084
- / -
117083
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
28 RP23-438F8
chr6_steel
bM438F8
-
-
AC164524.5
finished
180937 RPCI-23 3' / 3'
180937 / 106046
- / -
53253
0.06
Identified
2014-11-12
fetch_ncbi...
humpub
 
29 RP24-113L15
chr6_steel
bN113L15
-
-
AC155657.8
finished
159299 RPCI-24 5' / 3'
1 / 157267
- / -
48981
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
30 RP23-200J18
chr6_steel
bM200J18
-
-
AC132453.3
finished
206248 RPCI-23 5' / 5'
1 / 54940
- / -
54938
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
31 RP23-4H14
chr6_steel
bM4H14
-
-
AC152961.2
finished
227467 RPCI-23 3' / 3'
227467 / 123169
- / -
63283
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
32 RP23-237F16
chr6_steel
bM237F16
-
-
AC141927.3
finished
186452 RPCI-23 5' / 5'
1 / 256
- / -
255
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
33 RP24-365C10
chr6_steel
bN365C10
-
-
AC154020.3
finished
172981 RPCI-24 3' / 3'
172981 / 139675
- / -
12574
0.24
Identified
2014-11-12
fetch_ncbi...
humpub
 
34 RP24-462N21
chr6_steel
bN462N21
-
-
AC155915.2
finished
152279 RPCI-24 5' / 5'
1 / 51752
- / -
51751
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
35 RP23-11P24
chr6_steel
bM11P24
-
-
AC153817.6
finished
247508 RPCI-23 3' / 5'
247508 / 98634
- / -
98613
0.02
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate rejected
36 RP23-15E20
chr6_steel
bM15E20
-
-
AC164578.5
finished
225564 RPCI-23 3' / 5'
225564 / 22487
- / -
22486
0
Identified
2014-11-12
fetch_ncbi...
humpub
Certificate approved
37 RP23-83K15
chr6_steel
bM83K15
-
-
AC115767.14
finished
257790 RPCI-23 3' / 3'
257790 / 68265
- / -
125886
0
Identified
2005-09-05
find_overl...
badger
 
38 RP23-103K17
chr6_steel
bM103K17
-
-
AC152976.1
finished
194151 RPCI-23 5' / 3'
104238 / 186488
- / -
104243
0.01
Identified
2008-07-03
find_overl...
humpub
 
39 RP23-296I18
chr6_steel
bM296I18
-
-
AC102668.12
finished
186488 RPCI-23 5' / 3'
1 / 121034
- / -
77026
0
Identified
2014-11-12
fetch_ncbi...
humpub
 
40 RP23-104H13
chr6_steel
bM104H13
-
-
AC153627.2
finished
198060 RPCI-23        

Statistics

Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
39
Clone HTGS Phases
finished
39
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,358,435
Total finished length of fin clones w/ overlap
7,457,394
Total finished length of fin clones w/o overlap
5,098,959
Total overlap length of fin+unfin clones
2,358,435
Total finished length of fin+unfin clones w/ overlap
7,457,394
Total finished length of fin+unfin clones w/o overlap
5,098,959

AGP errors

# rank accession seq_start seq_end strand error date
1 39 AC152976.1 104,238 68,265 -1 For sequence AC152976.1 chr_length = -35972 which is less than 1! (start = 104238 end = 68265) This sequence may be redundant, or its overlaps are wrong Mon, 22 Dec 2014 01:09

Dovetails

# rank accession status length date
1 13 AC024913.33 unfinished 7 Mon, 22 Dec 2014 01:09

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Other links

* quick link - http://q.sanger.ac.uk/4x8k89y8