ChromoView - clone / Assembly sequencing status

Mouse: Sub region chr6_steel (TPF updated: 2005-10-05)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 RP23-75J13
chr6_steel
bM75J13
AC069469.5
finished
2 RP23-353E8
chr6_steel
bM353E8
AC079216.4
finished
3 RP23-459D9
chr6_steel
bM459D9
AC134897.4
finished
4 RP23-450O1
chr6_steel
bM450O1
AC153632.2
finished
5 RP23-1D15
chr6_steel
bM1D15
AC161538.7
finished
6 RP23-384N6
chr6_steel
bM384N6
AC160148.7
finished
7 RP24-534P19
chr6_steel
bN534P19
AC155848.6
finished
8 RP24-67I3
chr6_steel
bN67I3
AC155656.10
finished
9 RP24-211G11
chr6_steel
bN211G11
AC146699.5
finished
  GAP (type-3) length 100000 bps    
11 RP23-430F24
chr6_steel
bM430F24
AC121800.2
finished
12 RP23-459L15
chr6_steel
bM459L15
AC153820.4
finished
13 RP23-402K12
chr6_steel
bM402K12
AC024913.33
finished
14 RP23-400L4
chr6_steel
bM400L4
AC158658.4
finished
15 RP24-286A19
chr6_steel
bN286A19
AC132305.3
finished
16 RP23-192D5
chr6_steel
bM192D5
AC153837.4
finished
17 RP24-414G20
chr6_steel
bN414G20
AC166178.10
finished
18 RP24-538P5
chr6_steel
bN538P5
AC166040.3
finished
19 RP23-296F15
chr6_steel
bM296F15
AC153796.1
finished
20 RP24-158J4
chr6_steel
bN158J4
AC155847.3
finished
21 RP23-462O13
chr6_steel
bM462O13
AC153629.3
finished
22 RP23-400K22
chr6_steel
bM400K22
AC153867.3
finished
23 RP23-289O16
chr6_steel
bM289O16
AC153630.1
finished
24 RP23-142I6
chr6_steel
bM142I6
AC158678.6
finished
25 RP23-260M5
chr6_steel
bM260M5
AC153841.1
finished
26 RP23-225G5
chr6_steel
bM225G5
AC152943.1
finished
27 RP24-246G10
chr6_steel
bN246G10
AC156288.5
finished
28 RP23-438F8
chr6_steel
bM438F8
AC164524.5
finished
29 RP24-113L15
chr6_steel
bN113L15
AC155657.8
finished
30 RP23-200J18
chr6_steel
bM200J18
AC132453.3
finished
31 RP23-4H14
chr6_steel
bM4H14
AC152961.2
finished
32 RP23-237F16
chr6_steel
bM237F16
AC141927.3
finished
33 RP24-365C10
chr6_steel
bN365C10
AC154020.3
finished
34 RP24-462N21
chr6_steel
bN462N21
AC155915.2
finished
35 RP23-11P24
chr6_steel
bM11P24
AC153817.6
finished
36 RP23-15E20
chr6_steel
bM15E20
AC164578.5
finished
37 RP23-83K15
chr6_steel
bM83K15
AC115767.14
finished
38 RP23-103K17
chr6_steel
bM103K17
AC152976.1
finished
39 RP23-296I18
chr6_steel
bM296I18
AC102668.12
finished
40 RP23-104H13
chr6_steel
bM104H13
AC153627.2
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 172786 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC069469.5 1 172786 +
172787 360946 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC079216.4 33589 221748 +
360947 456815 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC134897.4 1 95869 -
456816 543455 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC153632.2 1 86640 -
543456 675881 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC161538.7 1 132426 -
675882 750755 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC160148.7 1 74874 -
750756 923026 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC155848.6 1 172271 -
923027 1071091 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC155656.10 14054 162118 +
1071092 1118408 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 AC146699.5 1 47317 -
1118409 1218408 10 N 100000 contig no
1218409 1406720 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC121800.2 1 188312 -
1406721 1549306 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153820.4 1 142586 -
1549307 1604608 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC024913.33 142530 197831 +
1604609 1784701 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC158658.4 17817 197909 +
1784702 1855915 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC132305.3 1 71214 -
1855916 2030700 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153837.4 1 174785 -
2030701 2150971 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC166178.10 1 120271 -
2150972 2320921 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC166040.3 30898 200847 +
2320922 2426630 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153796.1 1 105709 -
2426631 2513676 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC155847.3 1 87046 -
2513677 2682233 21 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153629.3 8638 177194 +
2682234 2702428 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153867.3 33498 53692 +
2702429 2788075 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153630.1 1 85647 +
2788076 3005661 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC158678.6 1 217586 -
3005662 3121060 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153841.1 75143 190541 +
3121061 3316909 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC152943.1 1 195849 -
3316910 3433988 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC156288.5 49845 166923 +
3433989 3497842 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC164524.5 117084 180937 +
3497843 3603888 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC155657.8 1 106046 -
3603889 3761155 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC132453.3 1 157267 -
3761156 3933683 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC152961.2 54940 227467 +
3933684 4056852 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC141927.3 1 123169 -
4056853 4229578 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC154020.3 256 172981 +
4229579 4369253 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC155915.2 1 139675 -
4369254 4565010 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC153817.6 51752 247508 +
4565011 4691941 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC164578.5 98634 225564 +
4691942 4927245 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC115767.14 22487 257790 +
4927246 4927245 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 38 AC152976.1 104238 68265 -
4927246 4932245 39 N 5000 contig no
4932246 5118733 40 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 41 AC102668.12 1 186488 -
5118734 5239767 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 40 - 41 AC153627.2 1 121034 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
1
Gap types
type-3
1
Total clones
39
Clone HTGS Phases
finished
39
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
2,358,435
Total finished length of fin clones w/ overlap
7,457,394
Total finished length of fin clones w/o overlap
5,098,959
Total overlap length of fin+unfin clones
2,358,435
Total finished length of fin+unfin clones w/ overlap
7,457,394
Total finished length of fin+unfin clones w/o overlap
5,098,959

AGP errors

# rank accession seq_start seq_end strand error date
1 39 AC152976.1 104,238 68,265 -1 For sequence AC152976.1 chr_length = -35972 which is less than 1! (start = 104238 end = 68265) This sequence may be redundant, or its overlaps are wrong Wed, 05 Aug 2015 01:37

Dovetails

# rank accession status length date
1 13 AC024913.33 unfinished 7 Wed, 05 Aug 2015 01:37

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* quick link - http://q.sanger.ac.uk/4x8k89y8