ChromoView - clone / Assembly sequencing status

Chimp: Chromosome X (TPF updated: 2005-06-21)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 001P01
ptr_X_IMB_01
001P01
AC152353.1
finished
  GAP (type-3) length unknown    
3 033N16
ptr_X_IMB_01
033N16
AC152102.1
contiguous
  GAP (type-3) length unknown    
5 099J01
ptr_X_IMB_01
099J01
AC149132.1
finished
  GAP (type-3) length unknown    
7 095F07
ptr_X_IMB_01
095F07
AC149310.1
finished
  GAP (type-3) length unknown    
9 130I08
ptr_X_IMB_01
130I08
AC149311.1
finished
  GAP (type-3) length unknown    
11 043C05
ptr_X_IMB_01
043C05
AC150208.1
finished
12 085O24
ptr_X_IMB_01
085O24
AC150209.1
finished
  GAP (type-3) length unknown    
14 051H11
ptr_X_IMB_01
051H11
AC150210.1
finished
  GAP (type-3) length unknown    
16 017F15
ptr_X_IMB_01
017F15
AC149238.1
finished
  GAP (type-3) length unknown    
18 009M14
ptr_X_IMB_01
009M14
AC150565.1
finished
  GAP (type-3) length unknown    
20 025L12
ptr_X_IMB_01
025L12
AC148942.1
finished
  GAP (type-3) length unknown    
22 041A20
ptr_X_IMB_01
041A20
AC148447.2
finished
  GAP (type-3) length unknown    
24 010O16
ptr_X_IMB_01
010O16
AC149133.1
finished
  GAP (type-3) length unknown    
26 007I07
ptr_X_IMB_01
007I07
AC148448.2
finished
  GAP (type-3) length unknown    
28 038O03
ptr_X_IMB_01
038O03
AC152891.2
finished
  GAP (type-3) length unknown    
30 084K12
ptr_X_IMB_01
084K12
AC151710.1
finished
  GAP (type-3) length unknown    
32 007P20
ptr_X_IMB_01
007P20
AC151408.1
finished
  GAP (type-3) length unknown    
34 055J03
ptr_X_IMB_01
055J03
AC152456.1
finished
35 089K20
ptr_X_IMB_01
089K20
AC149790.1
finished
  GAP (type-3) length unknown    
37 011D19
ptr_X_IMB_01
011D19
AC152354.2
contiguous
38 057B02
ptr_X_IMB_01
057B02
AC151913.1
finished
39 093M21
ptr_X_IMB_01
093M21
AC151912.1
finished
  GAP (type-3) length unknown    
41 089E19
ptr_X_IMB_01
089E19
AC149044.1
finished
  GAP (type-3) length unknown    
43 034P07
ptr_X_IMB_01
034P07
AC149233.1
finished
44 085L05
ptr_X_IMB_01
085L05
AC149234.1
finished
45 119K17
ptr_X_IMB_01
119K17
AC149236.1
finished
46 049A09
ptr_X_IMB_01
049A09
AC149237.1
finished
47 100E10
ptr_X_IMB_01
100E10
AC149235.1
finished
  GAP (type-3) length unknown    
49 026P08
ptr_X_IMB_01
026P08
AC152163.1
contiguous
  GAP (type-3) length unknown    
51 007H19
ptr_X_IMB_01
007H19
AC151667.1
finished
  GAP (type-3) length unknown    
53
ptr_X_IMB_01
AC118586
AC118586.41
contiguous
54 029D14
ptr_X_IMB_01
029D14
AC151486.1
finished
55 044F10
ptr_X_IMB_01
044F10
AC148650.1
finished
  GAP (type-3) length unknown    
57 155J01
ptr_X_IMB_01
155J01
AC151600.2
contiguous

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 218326 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 1 AC152353.1 1 218326 +
218327 268326 2 N 50000 contig no
268327 438166 3 A AC152102.1 1 169840 +
438167 488166 4 N 50000 contig no
488167 704028 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 5 AC149132.1 1 215862 +
704029 754028 6 N 50000 contig no
754029 778918 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 7 AC149310.1 1 24890 +
778919 828918 8 N 50000 contig no
828919 845648 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 9 AC149311.1 1 16730 +
845649 895648 10 N 50000 contig no
895649 1090095 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC150208.1 1 194447 +
1090096 1161854 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 11 - 12 AC150209.1 135907 207665 +
1161855 1211854 13 N 50000 contig no
1211855 1400651 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 AC150210.1 1 188797 +
1400652 1450651 15 N 50000 contig no
1450652 1511122 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 AC149238.1 1 60471 +
1511123 1561122 17 N 50000 contig no
1561123 1721437 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 18 AC150565.1 1 160315 +
1721438 1771437 19 N 50000 contig no
1771438 1912907 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 20 - 20 AC148942.1 1 141470 +
1912908 1962907 21 N 50000 contig no
1962908 2173381 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 AC148447.2 1 210474 +
2173382 2223381 23 N 50000 contig no
2223382 2402708 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 24 - 24 AC149133.1 1 179327 +
2402709 2452708 25 N 50000 contig no
2452709 2497083 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 26 AC148448.2 1 44375 +
2497084 2547083 27 N 50000 contig no
2547084 2744902 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 28 - 28 AC152891.2 1 197819 +
2744903 2794902 29 N 50000 contig no
2794903 2969643 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 30 - 30 AC151710.1 1 174741 +
2969644 3019643 31 N 50000 contig no
3019644 3087961 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 32 - 32 AC151408.1 1 68318 +
3087962 3137961 33 N 50000 contig no
3137962 3280852 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 AC152456.1 1 142891 +
3280853 3327721 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 34 - 35 AC149790.1 1041 47909 +
3327722 3377721 36 N 50000 contig no
3377722 3567735 37 A AC152354.2 1 190014 +
3567736 3727074 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 AC151913.1 14548 173886 +
3727075 3846808 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 38 - 39 AC151912.1 61171 180904 +
3846809 3896808 40 N 50000 contig no
3896809 4090377 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 AC149044.1 1 193569 +
4090378 4140377 42 N 50000 contig no
4140378 4247635 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC149233.1 1 107258 +
4247636 4434460 44 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC149234.1 1 186825 +
4434461 4557083 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC149236.1 68932 191554 +
4557084 4720899 46 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC149237.1 4556 168371 +
4720900 4826824 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 47 AC149235.1 77487 183411 +
4826825 4876824 48 N 50000 contig no
4876825 5058101 49 A AC152163.1 1 181277 +
5058102 5108101 50 N 50000 contig no
5108102 5308897 51 FClick to retrieve finished assembled sequence in green bar: rank(s) 51 - 51 AC151667.1 1 200796 +
5308898 5358897 52 N 50000 contig no
5358898 5477647 53 A AC118586.41 41682 160431 -
5477648 5619614 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 55 AC151486.1 12053 154019 +
5619615 5725991 55 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 55 AC148650.1 47450 153826 +
5725992 5775991 56 N 50000 contig no
5775992 6025534 57 A AC151600.2 1 249543 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 001P01
ptr_X_IMB_01
001P01
-
-
AC152353.1
finished
218326 -        
  GAP (type-3) length unknown                  
3 033N16
ptr_X_IMB_01
033N16
-
-
AC152102.1
contiguous
169840 -        
  GAP (type-3) length unknown                  
5 099J01
ptr_X_IMB_01
099J01
-
-
AC149132.1
finished
215862 -        
  GAP (type-3) length unknown                  
7 095F07
ptr_X_IMB_01
095F07
-
-
AC149310.1
finished
24890 -        
  GAP (type-3) length unknown                  
9 130I08
ptr_X_IMB_01
130I08
-
-
AC149311.1
finished
16730 -        
  GAP (type-3) length unknown                  
11 043C05
ptr_X_IMB_01
043C05
-
-
AC150208.1
finished
194447 - 3' / 5'
194447 / 135907
- / -
135908
0
Identified
2005-06-21
find_overl...
badger
 
12 085O24
ptr_X_IMB_01
085O24
-
-
AC150209.1
finished
207665 -        
  GAP (type-3) length unknown                  
14 051H11
ptr_X_IMB_01
051H11
-
-
AC150210.1
finished
188797 -        
  GAP (type-3) length unknown                  
16 017F15
ptr_X_IMB_01
017F15
-
-
AC149238.1
finished
60471 -        
  GAP (type-3) length unknown                  
18 009M14
ptr_X_IMB_01
009M14
-
-
AC150565.1
finished
160315 -        
  GAP (type-3) length unknown                  
20 025L12
ptr_X_IMB_01
025L12
-
-
AC148942.1
finished
141470 -        
  GAP (type-3) length unknown                  
22 041A20
ptr_X_IMB_01
041A20
-
-
AC148447.2
finished
210474 -        
  GAP (type-3) length unknown                  
24 010O16
ptr_X_IMB_01
010O16
-
-
AC149133.1
finished
179327 -        
  GAP (type-3) length unknown                  
26 007I07
ptr_X_IMB_01
007I07
-
-
AC148448.2
finished
44375 -        
  GAP (type-3) length unknown                  
28 038O03
ptr_X_IMB_01
038O03
-
-
AC152891.2
finished
197819 -        
  GAP (type-3) length unknown                  
30 084K12
ptr_X_IMB_01
084K12
-
-
AC151710.1
finished
174741 -        
  GAP (type-3) length unknown                  
32 007P20
ptr_X_IMB_01
007P20
-
-
AC151408.1
finished
68318 -        
  GAP (type-3) length unknown                  
34 055J03
ptr_X_IMB_01
055J03
-
-
AC152456.1
finished
142891 - 3' / 5'
142891 / 1041
- / -
1040
0
Identified
2005-06-21
find_overl...
badger
 
35 089K20
ptr_X_IMB_01
089K20
-
-
AC149790.1
finished
47909 -        
  GAP (type-3) length unknown                  
37 011D19
ptr_X_IMB_01
011D19
-
-
AC152354.2
contiguous
190014 - 3' / 5'
190014 / 14548
- / -
14547
0
Identified
2007-09-24
find_overl...
ck1
 
38 057B02
ptr_X_IMB_01
057B02
-
-
AC151913.1
finished
173886 - 3' / 5'
173886 / 61171
- / -
61173
0.06
Identified
2005-06-21
find_overl...
badger
 
39 093M21
ptr_X_IMB_01
093M21
-
-
AC151912.1
finished
180904 -        
  GAP (type-3) length unknown                  
41 089E19
ptr_X_IMB_01
089E19
-
-
AC149044.1
finished
193569 -        
  GAP (type-3) length unknown                  
43 034P07
ptr_X_IMB_01
034P07
-
-
AC149233.1
finished
169963 - 3' / 5'
107258 / 1
- / -
62738
0.24
Identified
2005-06-21
find_overl...
badger
 
44 085L05
ptr_X_IMB_01
085L05
-
-
AC149234.1
finished
186825 - 3' / 5'
186825 / 68932
- / -
68931
0
Identified
2005-06-21
find_overl...
badger
 
45 119K17
ptr_X_IMB_01
119K17
-
-
AC149236.1
finished
191554 - 3' / 5'
191554 / 4556
- / -
4555
0.11
Identified
2005-06-21
find_overl...
badger
 
46 049A09
ptr_X_IMB_01
049A09
-
-
AC149237.1
finished
168371 - 3' / 5'
168371 / 77487
- / -
77504
0.22
Identified
2005-06-21
find_overl...
badger
 
47 100E10
ptr_X_IMB_01
100E10
-
-
AC149235.1
finished
183411 -        
  GAP (type-3) length unknown                  
49 026P08
ptr_X_IMB_01
026P08
-
-
AC152163.1
contiguous
181277 -        
  GAP (type-3) length unknown                  
51 007H19
ptr_X_IMB_01
007H19
-
-
AC151667.1
finished
200796 -        
  GAP (type-3) length unknown                  
53
ptr_X_IMB_01
AC118586
-
-
AC118586.41
contiguous
160431 - 5' / 5'
41682 / 12053
- / 12052
41686
0.11
Commented
2005-06-21
edit_overl...
ck1
 
54 029D14
ptr_X_IMB_01
029D14
-
-
AC151486.1
finished
154019 - 3' / 5'
154019 / 47450
- / -
47461
0.03
Identified
2005-06-21
find_overl...
badger
 
55 044F10
ptr_X_IMB_01
044F10
-
-
AC148650.1
finished
153826 -        
  GAP (type-3) length unknown                  
57 155J01
ptr_X_IMB_01
155J01
-
-
AC151600.2
contiguous
249543 -        

Statistics

Clone Summary

Number of gaps
23
Gap types
type-3
23
Total clones
34
Clone HTGS Phases
contiguous
5
finished
29
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
459,310
Total finished length of fin clones w/ overlap
4,451,951
Total finished length of fin clones w/o overlap
3,992,641
Total overlap length of fin+unfin clones
515,543
Total finished length of fin+unfin clones w/ overlap
5,403,056
Total finished length of fin+unfin clones w/o overlap
4,887,513

Dovetails

# rank accession status length date
1 54 AC151486.1 unfinished 12,052 Fri, 28 Nov 2014 23:02

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Other links

* quick link - http://q.sanger.ac.uk/ejic39vq