ChromoView - clone / Assembly sequencing status

Platypus: Chromosome U (TPF updated: 2007-11-02)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 CLM1-404E12
Platypus_Uctg4
CLM1_404E12
EPN details
CT573041.4
finished
2 CLM1-522J9
Platypus_Uctg4
CLM1_522J9
EPN details
CT009533.6
finished
3 CLM1-501G18
Platypus_Uctg4
CLM1_501G18
EPN details
CT573042.6
finished
4 CLM1-153M12
Platypus_Uctg4
CLM1_153M12
EPN details
CU207378.2
finished
5 CLM1-244B17
Platypus_Uctg4
CLM1_244B17
EPN details
CU074383.3
finished
6 CLM1-378C21
Platypus_Uctg4
CLM1_378C21
EPN details
CR855264.9
finished
7 CLM1-307A9
Platypus_Uctg4
CLM1_307A9
EPN details
CR536601.8
finished
  GAP (type-4) length 50000 bps    
9 CLM1-42M21
Platypus_Uctg101
CLM1_42M21
EPN details
CT573151.3
finished
10 CLM1-109G23
Platypus_Uctg101
CLM1_109G23
EPN details
CU329673.1
finished
11 CLM1-378I11
Platypus_Uctg101
CLM1_378I11
EPN details
CU302417.1
finished
12 CLM1-300J13
Platypus_Uctg101
CLM1_300J13
EPN details
CT030198.1
finished
  GAP (type-4) length 50000 bps    
14 CLM1-411I21
Platypus_Uctg182
CLM1_411I21
EPN details
CU694239.3
finished
  GAP (type-3) length 50000 bps    
16 CLM1-393O16
Platypus_Uctg52
CLM1_393O16
EPN details
CU582829.1
finished
  GAP (type-3) length 50000 bps    
18 CLM1-349H20
Platypus_Uctg53
CLM1_349H20
EPN details
CT573284.1
finished
19 CLM1-419N16
Platypus_Uctg53
CLM1_419N16
EPN details
CU393928.2
finished
20 CLM1-407O14
Platypus_Uctg53
CLM1_407O14
EPN details
CU463951.1
finished
  GAP (type-3) length 50000 bps    
22 CLM1-377H6
Platypus_Uctg53
CLM1_377H6
EPN details
CU459041.1
finished
  GAP (type-3) length 50000 bps    
24 CLM1-354H15
Platypus_Uctg157
CLM1_354H15
EPN details

-
  GAP (type-3) length 50000 bps    
26 CLM1-452G3
Platypus_Uctg3
CLM1_452G3
EPN details
CU467016.2
finished
27 CLM1-247D19
Platypus_Uctg3
CLM1_247D19
EPN details
CU469081.1
finished
  GAP (type-3) length 5000 bps    
29 CLM1-557O10
Platypus_Uctg3
CLM1_557O10
EPN details
CU469383.1
finished
  GAP (type-3) length 50000 bps    
31 CLM1-30C3
Platypus_Uctg151
CLM1_30C3
EPN details
CU469422.2
finished
  GAP (type-4) length 50000 bps    
33 CLM1-4N21
Platypus_Uctg56
CLM1_4N21
EPN details
CT978601.1
finished
  GAP (type-4) length 50000 bps    
35 CLM1-308I15
Platypus_Uctg99
CLM1_308I15
EPN details
CU207364.4
finished
  GAP (type-4) length 50000 bps    
37 CLM1-554A3
Platypus_Uctg14
CLM1_554A3
EPN details
CU582830.1
finished
38 CLM1-102P15
Platypus_Uctg14
CLM1_102P15
EPN details
CU466306.2
finished
39 CLM1-102I6
Platypus_Uctg14
Cl/Pr CLM1_102I6/bCJ147B13 swap
EPN details
CR933560.3
finished
  GAP (type-4) length 50000 bps    
41 CLM1-516O5
Platypus_Uctg1
CLM1_516O5
EPN details
BX936293.11
finished
  GAP (type-3) length 50000 bps    
43 CLM1-534O22
Platypus_Uctg2
CLM1_534O22
EPN details
BX936288.8
finished
  GAP (type-4) length 50000 bps    
45 CLM1-231M12
Platypus_Uctg21
Cl/Pr CLM1_231M12/CLM1_102I6 swap
EPN details
CR938721.5
finished
  GAP (type-4) length 50000 bps    
47 CLM1-318I17
Platypus_Uctg141
CLM1_318I17
EPN details
CU326346.2
finished
  GAP (type-4) length 50000 bps    
49 CLM1-104A18
Platypus_Uctg9
CLM1_104A18
EPN details
CR456637.3
finished
50 CLM1-452D13
Platypus_Uctg9
CLM1_452D13
EPN details
BX936280.10
finished
  GAP (type-4) length 50000 bps    
52 CLM1-235F6
Platypus_Uctg12
CLM1_235F6
EPN details
CR855278.2
finished
  GAP (type-4) length 50000 bps    
54 CLM1-572A11
Platypus_Uctg97
CLM1_572A11
EPN details
CU041381.1
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 53489 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CT573041.4 1 53489 +
53490 201408 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CT009533.6 2001 149919 +
201409 325065 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CT573042.6 2001 125657 +
325066 406518 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CU207378.2 2001 83453 +
406519 472167 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CU074383.3 2001 67649 +
472168 605563 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CR855264.9 2001 135396 +
605564 795237 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CR536601.8 2001 191674 +
795238 845237 8 N 50000 contig no
845238 965843 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CT573151.3 1 120606 +
965844 1081495 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CU329673.1 2001 117652 +
1081496 1181726 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CU302417.1 2001 102231 +
1181727 1329398 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CT030198.1 1 147672 -
1329399 1379398 13 N 50000 contig no
1379399 1532574 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CU694239.3 1 153176 +
1532575 1582574 15 N 50000 contig no
1582575 1652982 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CU582829.1 1 70408 +
1652983 1702982 17 N 50000 contig no
1702983 1854957 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CT573284.1 1 151975 -
1854958 1883403 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CU393928.2 2001 30446 +
1883404 1946522 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CU463951.1 2001 65119 +
1946523 1996522 21 N 50000 contig no
1996523 2114021 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CU459041.1 1 117499 +
2114022 2164021 23 N 50000 contig no
2164022 2214021 24 N 50000 clone no
2214022 2264021 25 N 50000 contig no
2264022 2411988 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CU467016.2 1 147967 +
2411989 2416100 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CU469081.1 2001 6112 +
2416101 2421100 28 N 5000 contig no
2421101 2429911 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CU469383.1 1 8811 +
2429912 2479911 30 N 50000 contig no
2479912 2624859 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CU469422.2 1 144948 +
2624860 2674859 32 N 50000 contig no
2674860 2810613 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 CT978601.1 1 135754 +
2810614 2860613 34 N 50000 contig no
2860614 3013549 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CU207364.4 1 152936 +
3013550 3063549 36 N 50000 contig no
3063550 3256557 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CU582830.1 1 193008 +
3256558 3320933 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CU466306.2 2001 66376 +
3320934 3447350 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CR933560.3 2001 128417 +
3447351 3497350 40 N 50000 contig no
3497351 3675525 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 BX936293.11 1 178175 +
3675526 3725525 42 N 50000 contig no
3725526 3879089 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 BX936288.8 1 153564 +
3879090 3929089 44 N 50000 contig no
3929090 4100969 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CR938721.5 1 171880 +
4100970 4150969 46 N 50000 contig no
4150970 4357095 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CU326346.2 1 206126 +
4357096 4407095 48 N 50000 contig no
4407096 4517572 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 CR456637.3 1 110477 +
4517573 4638172 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 BX936280.10 2001 122600 +
4638173 4688172 51 N 50000 contig no
4688173 4828682 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 CR855278.2 1 140510 +
4828683 4878682 53 N 50000 contig no
4878683 5054510 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CU041381.1 1 175828 +

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 CLM1-404E12
Platypus_Uctg4
CLM1_404E12
EPN details
Submitted to EMBL
09-FEB-06
CT573041.4
finished
53489 CUGI platypus BACs 3' / 5'
53489 / 2001
- / -
2000
0
Identified
2006-01-25
find_overl...
badger
 
2 CLM1-522J9
Platypus_Uctg4
CLM1_522J9
EPN details
Analysed
11-OCT-05
CT009533.6
finished
149919 CUGI platypus BACs 3' / 5'
149919 / 2001
- / -
2000
0
Identified
2006-06-03
find_overl...
badger
 
3 CLM1-501G18
Platypus_Uctg4
CLM1_501G18
EPN details
Analysed
03-JUN-06
CT573042.6
finished
125657 CUGI platypus BACs 3' / 5'
125657 / 2001
- / -
2000
0
Identified
2006-11-18
find_overl...
badger
 
4 CLM1-153M12
Platypus_Uctg4
CLM1_153M12
EPN details
Analysed
17-NOV-06
CU207378.2
finished
83453 CUGI platypus BACs 3' / 5'
83453 / 2001
- / -
2000
0
Identified
2006-11-18
find_overl...
badger
 
5 CLM1-244B17
Platypus_Uctg4
CLM1_244B17
EPN details
Analysed
14-OCT-06
CU074383.3
finished
67649 CUGI platypus BACs 3' / 5'
67649 / 2001
- / -
2000
0
Identified
2006-10-14
find_overl...
badger
 
6 CLM1-378C21
Platypus_Uctg4
CLM1_378C21
EPN details
Analysed
10-JUN-05
CR855264.9
finished
135396 CUGI platypus BACs 3' / 5'
135396 / 2001
- / -
2000
0
Identified
2005-06-03
find_overl...
badger
 
7 CLM1-307A9
Platypus_Uctg4
CLM1_307A9
EPN details
Analysed
11-SEP-04
CR536601.8
finished
191674 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
9 CLM1-42M21
Platypus_Uctg101
CLM1_42M21
EPN details
Submitted to EMBL
09-FEB-06
CT573151.3
finished
120606 CUGI platypus BACs 3' / 5'
120606 / 2001
- / -
2000
0.05
Identified
2007-01-20
find_overl...
badger
 
10 CLM1-109G23
Platypus_Uctg101
CLM1_109G23
EPN details
Analysed
19-JAN-07
CU329673.1
finished
117652 CUGI platypus BACs 3' / 5'
117652 / 2001
- / -
2000
0
Identified
2007-01-20
find_overl...
badger
 
11 CLM1-378I11
Platypus_Uctg101
CLM1_378I11
EPN details
Analysed
15-DEC-06
CU302417.1
finished
102231 CUGI platypus BACs 3' / 3'
102231 / 147672
- / -
2000
0
Identified
2006-12-16
find_overl...
badger
 
12 CLM1-300J13
Platypus_Uctg101
CLM1_300J13
EPN details
Analysed
15-OCT-05
CT030198.1
finished
149672 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
14 CLM1-411I21
Platypus_Uctg182
CLM1_411I21
EPN details
Analysed
15-APR-08
CU694239.3
finished
153176 CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
16 CLM1-393O16
Platypus_Uctg52
CLM1_393O16
EPN details
Analysed
28-NOV-07
CU582829.1
finished
70408 CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
18 CLM1-349H20
Platypus_Uctg53
CLM1_349H20
EPN details
Analysed
24-JAN-06
CT573284.1
finished
151975 CUGI platypus BACs 5' / 5'
1 / 2001
- / -
2000
0
Identified
2008-07-04
find_overl...
humpub
 
19 CLM1-419N16
Platypus_Uctg53
CLM1_419N16
EPN details
Analysed
10-FEB-07
CU393928.2
finished
30446 CUGI platypus BACs 3' / 5'
30446 / 2001
- / -
2000
0
Identified
2007-07-05
find_overl...
gjc
 
20 CLM1-407O14
Platypus_Uctg53
CLM1_407O14
EPN details
Analysed
25-JUN-07
CU463951.1
finished
65119 CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
22 CLM1-377H6
Platypus_Uctg53
CLM1_377H6
EPN details
Analysed
05-APR-07
CU459041.1
finished
117499 CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
24 CLM1-354H15
Platypus_Uctg157
CLM1_354H15
EPN details
Assigned to prefinisher
12-SEP-07

-
- CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
26 CLM1-452G3
Platypus_Uctg3
CLM1_452G3
EPN details
Analysed
31-AUG-07
CU467016.2
finished
147967 CUGI platypus BACs 3' / 5'
147967 / 2001
- / -
2000
0
Identified
2007-10-03
find_overl...
humpub
 
27 CLM1-247D19
Platypus_Uctg3
CLM1_247D19
EPN details
Analysed
03-OCT-07
CU469081.1
finished
6112 CUGI platypus BACs        
  GAP (type-3) length 5000 bps                  
29 CLM1-557O10
Platypus_Uctg3
CLM1_557O10
EPN details
Analysed
17-OCT-07
CU469383.1
finished
8811 CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
31 CLM1-30C3
Platypus_Uctg151
CLM1_30C3
EPN details
Analysed
14-NOV-07
CU469422.2
finished
144948 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
33 CLM1-4N21
Platypus_Uctg56
CLM1_4N21
EPN details
Analysed
03-JUN-06
CT978601.1
finished
135754 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
35 CLM1-308I15
Platypus_Uctg99
CLM1_308I15
EPN details
Analysed
21-DEC-06
CU207364.4
finished
152936 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
37 CLM1-554A3
Platypus_Uctg14
CLM1_554A3
EPN details
Analysed
28-NOV-07
CU582830.1
finished
193008 CUGI platypus BACs 3' / 5'
193008 / 2001
- / -
2000
0.15
Identified
2007-11-28
find_overl...
humpub
 
38 CLM1-102P15
Platypus_Uctg14
CLM1_102P15
EPN details
Analysed
25-JUL-07
CU466306.2
finished
66376 CUGI platypus BACs 3' / 5'
66376 / 2001
- / -
2000
0
Identified
2007-08-22
find_overl...
gjc
 
39 CLM1-102I6
Platypus_Uctg14
Cl/Pr CLM1_102I6/bCJ147B13 swap
EPN details
Analysed
09-SEP-08
CR933560.3
finished
128417 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
41 CLM1-516O5
Platypus_Uctg1
CLM1_516O5
EPN details
Analysed
09-JUL-04
BX936293.11
finished
178175 CUGI platypus BACs        
  GAP (type-3) length 50000 bps                  
43 CLM1-534O22
Platypus_Uctg2
CLM1_534O22
EPN details
Analysed
15-APR-04
BX936288.8
finished
153564 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
45 CLM1-231M12
Platypus_Uctg21
Cl/Pr CLM1_231M12/CLM1_102I6 swap
EPN details
Analysed
27-JUL-06
CR938721.5
finished
171880 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
47 CLM1-318I17
Platypus_Uctg141
CLM1_318I17
EPN details
Analysed
23-JAN-07
CU326346.2
finished
206126 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
49 CLM1-104A18
Platypus_Uctg9
CLM1_104A18
EPN details
Analysed
29-JUN-04
CR456637.3
finished
110477 CUGI platypus BACs 3' / 5'
110477 / 2001
- / -
2000
0
Identified
2005-05-18
find_overl...
badger
 
50 CLM1-452D13
Platypus_Uctg9
CLM1_452D13
EPN details
Analysed
20-MAY-04
BX936280.10
finished
122600 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
52 CLM1-235F6
Platypus_Uctg12
CLM1_235F6
EPN details
Analysed
16-NOV-04
CR855278.2
finished
140510 CUGI platypus BACs        
  GAP (type-4) length 50000 bps                  
54 CLM1-572A11
Platypus_Uctg97
CLM1_572A11
EPN details
Analysed
22-JUL-06
CU041381.1
finished
175828 CUGI platypus BACs        

Statistics

Clone Summary

Number of gaps
19
Gap types
type-3
8
type-4
11
Total clones
35
Clone HTGS Phases
finished
34
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CLM1-354H15 (CLM1_354H15)

Overlap Summary

Total overlap length of fin clones
30,000
Total finished length of fin clones w/ overlap
4,129,510
Total finished length of fin clones w/o overlap
4,099,510
Total overlap length of fin+unfin clones
30,000
Total finished length of fin+unfin clones w/ overlap
4,129,510
Total finished length of fin+unfin clones w/o overlap
4,099,510

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Other links

* quick link - http://q.sanger.ac.uk/ict1uum0