ChromoView - clone / Assembly sequencing status

Platypus: Chromosome U (TPF updated: 2007-11-02)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 CLM1-404E12
Platypus_Uctg4
CLM1_404E12
CT573041.4
finished
2 CLM1-522J9
Platypus_Uctg4
CLM1_522J9
CT009533.6
finished
3 CLM1-501G18
Platypus_Uctg4
CLM1_501G18
CT573042.6
finished
4 CLM1-153M12
Platypus_Uctg4
CLM1_153M12
CU207378.2
finished
5 CLM1-244B17
Platypus_Uctg4
CLM1_244B17
CU074383.3
finished
6 CLM1-378C21
Platypus_Uctg4
CLM1_378C21
CR855264.9
finished
7 CLM1-307A9
Platypus_Uctg4
CLM1_307A9
CR536601.8
finished
  GAP (type-4) length 50000 bps    
9 CLM1-42M21
Platypus_Uctg101
CLM1_42M21
CT573151.3
finished
10 CLM1-109G23
Platypus_Uctg101
CLM1_109G23
CU329673.1
finished
11 CLM1-378I11
Platypus_Uctg101
CLM1_378I11
CU302417.1
finished
12 CLM1-300J13
Platypus_Uctg101
CLM1_300J13
CT030198.1
finished
  GAP (type-4) length 50000 bps    
14 CLM1-411I21
Platypus_Uctg182
CLM1_411I21
CU694239.3
finished
  GAP (type-3) length 50000 bps    
16 CLM1-393O16
Platypus_Uctg52
CLM1_393O16
CU582829.1
finished
  GAP (type-3) length 50000 bps    
18 CLM1-349H20
Platypus_Uctg53
CLM1_349H20
CT573284.1
finished
19 CLM1-419N16
Platypus_Uctg53
CLM1_419N16
CU393928.2
finished
20 CLM1-407O14
Platypus_Uctg53
CLM1_407O14
CU463951.1
finished
  GAP (type-3) length 50000 bps    
22 CLM1-377H6
Platypus_Uctg53
CLM1_377H6
CU459041.1
finished
  GAP (type-3) length 50000 bps    
24 CLM1-354H15
Platypus_Uctg157
CLM1_354H15

-
  GAP (type-3) length 50000 bps    
26 CLM1-452G3
Platypus_Uctg3
CLM1_452G3
CU467016.2
finished
27 CLM1-247D19
Platypus_Uctg3
CLM1_247D19
CU469081.1
finished
  GAP (type-3) length 5000 bps    
29 CLM1-557O10
Platypus_Uctg3
CLM1_557O10
CU469383.1
finished
  GAP (type-3) length 50000 bps    
31 CLM1-30C3
Platypus_Uctg151
CLM1_30C3
CU469422.2
finished
  GAP (type-4) length 50000 bps    
33 CLM1-4N21
Platypus_Uctg56
CLM1_4N21
CT978601.1
finished
  GAP (type-4) length 50000 bps    
35 CLM1-308I15
Platypus_Uctg99
CLM1_308I15
CU207364.4
finished
  GAP (type-4) length 50000 bps    
37 CLM1-554A3
Platypus_Uctg14
CLM1_554A3
CU582830.1
finished
38 CLM1-102P15
Platypus_Uctg14
CLM1_102P15
CU466306.2
finished
39 CLM1-102I6
Platypus_Uctg14
CLM1_102I6
CR933560.3
finished
  GAP (type-4) length 50000 bps    
41 CLM1-516O5
Platypus_Uctg1
CLM1_516O5
BX936293.11
finished
  GAP (type-3) length 50000 bps    
43 CLM1-534O22
Platypus_Uctg2
CLM1_534O22
BX936288.8
finished
  GAP (type-4) length 50000 bps    
45 CLM1-231M12
Platypus_Uctg21
CLM1_231M12
CR938721.5
finished
  GAP (type-4) length 50000 bps    
47 CLM1-318I17
Platypus_Uctg141
CLM1_318I17
CU326346.2
finished
  GAP (type-4) length 50000 bps    
49 CLM1-104A18
Platypus_Uctg9
CLM1_104A18
CR456637.3
finished
50 CLM1-452D13
Platypus_Uctg9
CLM1_452D13
BX936280.10
finished
  GAP (type-4) length 50000 bps    
52 CLM1-235F6
Platypus_Uctg12
CLM1_235F6
CR855278.2
finished
  GAP (type-4) length 50000 bps    
54 CLM1-572A11
Platypus_Uctg97
CLM1_572A11
CU041381.1
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 53489 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CT573041.4 1 53489 +
53490 201408 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CT009533.6 2001 149919 +
201409 325065 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CT573042.6 2001 125657 +
325066 406518 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CU207378.2 2001 83453 +
406519 472167 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CU074383.3 2001 67649 +
472168 605563 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CR855264.9 2001 135396 +
605564 795237 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 7 CR536601.8 2001 191674 +
795238 845237 8 N 50000 contig no
845238 965843 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CT573151.3 1 120606 +
965844 1081495 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CU329673.1 2001 117652 +
1081496 1181726 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CU302417.1 2001 102231 +
1181727 1329398 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 9 - 12 CT030198.1 1 147672 -
1329399 1379398 13 N 50000 contig no
1379399 1532574 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CU694239.3 1 153176 +
1532575 1582574 15 N 50000 contig no
1582575 1652982 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 16 CU582829.1 1 70408 +
1652983 1702982 17 N 50000 contig no
1702983 1854957 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CT573284.1 1 151975 -
1854958 1883403 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CU393928.2 2001 30446 +
1883404 1946522 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 18 - 20 CU463951.1 2001 65119 +
1946523 1996522 21 N 50000 contig no
1996523 2114021 22 FClick to retrieve finished assembled sequence in green bar: rank(s) 22 - 22 CU459041.1 1 117499 +
2114022 2164021 23 N 50000 contig no
2164022 2214021 24 N 50000 clone no
2214022 2264021 25 N 50000 contig no
2264022 2411988 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CU467016.2 1 147967 +
2411989 2416100 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 26 - 27 CU469081.1 2001 6112 +
2416101 2421100 28 N 5000 contig no
2421101 2429911 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 29 - 29 CU469383.1 1 8811 +
2429912 2479911 30 N 50000 contig no
2479912 2624859 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 31 - 31 CU469422.2 1 144948 +
2624860 2674859 32 N 50000 contig no
2674860 2810613 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 33 - 33 CT978601.1 1 135754 +
2810614 2860613 34 N 50000 contig no
2860614 3013549 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 35 - 35 CU207364.4 1 152936 +
3013550 3063549 36 N 50000 contig no
3063550 3256557 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CU582830.1 1 193008 +
3256558 3320933 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CU466306.2 2001 66376 +
3320934 3447350 39 FClick to retrieve finished assembled sequence in green bar: rank(s) 37 - 39 CR933560.3 2001 128417 +
3447351 3497350 40 N 50000 contig no
3497351 3675525 41 FClick to retrieve finished assembled sequence in green bar: rank(s) 41 - 41 BX936293.11 1 178175 +
3675526 3725525 42 N 50000 contig no
3725526 3879089 43 FClick to retrieve finished assembled sequence in green bar: rank(s) 43 - 43 BX936288.8 1 153564 +
3879090 3929089 44 N 50000 contig no
3929090 4100969 45 FClick to retrieve finished assembled sequence in green bar: rank(s) 45 - 45 CR938721.5 1 171880 +
4100970 4150969 46 N 50000 contig no
4150970 4357095 47 FClick to retrieve finished assembled sequence in green bar: rank(s) 47 - 47 CU326346.2 1 206126 +
4357096 4407095 48 N 50000 contig no
4407096 4517572 49 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 CR456637.3 1 110477 +
4517573 4638172 50 FClick to retrieve finished assembled sequence in green bar: rank(s) 49 - 50 BX936280.10 2001 122600 +
4638173 4688172 51 N 50000 contig no
4688173 4828682 52 FClick to retrieve finished assembled sequence in green bar: rank(s) 52 - 52 CR855278.2 1 140510 +
4828683 4878682 53 N 50000 contig no
4878683 5054510 54 FClick to retrieve finished assembled sequence in green bar: rank(s) 54 - 54 CU041381.1 1 175828 +

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
19
Gap types
type-3
8
type-4
11
Total clones
35
Clone HTGS Phases
finished
34
Number of clones w/o accession
1
Clones w/o htgs phase
1
Non-htgs clonenames
CLM1-354H15 (project unknown)

Overlap Summary

Total overlap length of fin clones
30,000
Total finished length of fin clones w/ overlap
4,129,510
Total finished length of fin clones w/o overlap
4,099,510
Total overlap length of fin+unfin clones
30,000
Total finished length of fin+unfin clones w/ overlap
4,129,510
Total finished length of fin+unfin clones w/o overlap
4,099,510

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Other links

* quick link - http://q.sanger.ac.uk/ict1uum0