ChromoView - clone / Assembly sequencing status

Pig: Sub region SSC6_test1 (TPF updated: 2005-04-05)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 PigE-92E11
ctg6009
bT92E11
EPN details
CR956649.3
finished
2 PigE-234J24
ctg6009
bT234J24
EPN details
CR956424.18
finished
3 CH242-20D9
ctg6009
bE20D9
EPN details
CR956423.7
finished
4 CH242-238N13
ctg6009
bE238N13
EPN details
CR974426.13
finished
5 PigE-225A14
ctg6009
bT225A14
EPN details
CR956421.19
finished
6 PigE-219P24
ctg6009
bT219P24
EPN details
CR956418.10
finished
7 CH242-231E9
ctg6009
bE231E9
EPN details
CR956382.7
finished
8 CH242-177A17

bE177A17
EPN details
CR956385.13
finished
9 PigE-223M7
ctg6009
bT223M7
EPN details
CR956415.12
finished
10 PigE-93N11
ctg6009
bT93N11
EPN details
CR956422.6
finished
11 CH242-30J21
ctg6009
bE30J21
EPN details
CR956425.14
finished
12 PigE-219N9
ctg6009
bT219N9
EPN details
CR956622.12
finished
13 CH242-51O7
ctg6009
bE51O7
EPN details
CR956427.7
finished
14 CH242-201A17
ctg6009
bE201A17
EPN details
CR974588.18
finished
15 CH242-171I16
ctg6009
bE171I16
EPN details
CR956650.4
finished
16 PigE-201A17
ctg6009
bT201A17
EPN details
CR974452.4
finished
17 PigE-204L22
ctg6009
bT204L22
EPN details
CR974432.6
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 127453 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956649.3 1 127453 +
127454 244184 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956424.18 2001 118731 +
244185 311503 3 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956423.7 2001 69319 +
311504 427041 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR974426.13 2001 117538 +
427042 551000 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956421.19 2001 125959 +
551001 724652 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956418.10 1 173652 +
724653 883452 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956382.7 27292 186091 +
883453 1061341 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956385.13 2001 179889 +
1061342 1199450 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 9 CR956415.12 70941 209049 +
1199451 1383853 10 F CR956422.6
Double 5-prime join to 'CR956422.6'
28 184430 -
1383854 1388853 11 N 5000 Bad overlap - double 5 prime join    
1388854 1464095 12 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 16 CR956425.14 2004 77245 +
1464096 1583514 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 16 CR956622.12 1584 121002 +
1583515 1757791 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 16 CR956427.7 11525 185801 +
1757792 1844010 15 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 16 CR974588.18 1 86219 +
1844011 1946860 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 12 - 16 CR956650.4 1995 104844 +
1946861 2031304 17 F CR974452.4
Double 3-prime join to 'CR974452.4'
1 84444 +
2031305 2036304 18 N 5000 Bad overlap - double 3 prime join    
2036305 2193504 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 19 CR974432.6 1 157200 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 PigE-92E11
ctg6009
bT92E11
EPN details
Submitted to EMBL
17-MAY-07
CR956649.3
finished
127453 PigE 3' / 5'
127453 / 2001
- / -
2000
0
Identified
2005-09-29
find_overl...
badger
 
2 PigE-234J24
ctg6009
bT234J24
EPN details
Cancelled
19-JUL-10
CR956424.18
finished
118731 PigE 3' / 5'
118731 / 2001
- / -
2000
0.1
Identified
2009-03-12
find_overl...
humpub
 
3 CH242-20D9
ctg6009
bE20D9
EPN details
Submitted to EMBL
17-MAY-07
CR956423.7
finished
69319 CHORI-242 3' / 5'
69319 / 2001
- / -
2000
0
Identified
2006-01-10
find_overl...
badger
 
4 CH242-238N13
ctg6009
bE238N13
EPN details
Analysed
10-JAN-06
CR974426.13
finished
117538 CHORI-242 3' / 5'
117538 / 2001
- / -
2000
0.35
Identified
2006-03-08
find_overl...
badger
 
5 PigE-225A14
ctg6009
bT225A14
EPN details
Cancelled
19-JUL-10
CR956421.19
finished
127959 PigE 3' / 5'
125959 / 1
- / -
2003
0.25
Identified
2009-03-12
find_overl...
humpub
 
6 PigE-219P24
ctg6009
bT219P24
EPN details
Submitted to EMBL
17-MAY-07
CR956418.10
finished
173652 PigE 3' / 5'
173652 / 27292
- / -
27367
0.92
Identified
2005-11-18
find_overl...
badger
 
7 CH242-231E9
ctg6009
bE231E9
EPN details
Submitted to EMBL
17-MAY-07
CR956382.7
finished
186091 CHORI-242 3' / 5'
186091 / 2001
- / -
2000
0
Identified
2006-03-08
find_overl...
badger
 
8 CH242-177A17

bE177A17
EPN details
Analysed
10-FEB-06
CR956385.13
finished
182211 CHORI-242 3' / 5'
179889 / 70941
- / 70940
2324
0.13
Identified
2006-03-08
find_overl...
badger
 
9 PigE-223M7
ctg6009
bT223M7
EPN details
Submitted to EMBL
17-MAY-07
CR956415.12
finished
209049 PigE 3' / 5'
209049 / 37
- / 1
35
0
Identified
2005-10-04
find_overl...
badger
 
10 PigE-93N11
ctg6009
bT93N11
EPN details
Submitted to EMBL
17-MAY-07
CR956422.6
finished
184430 PigE 5' / 5'
28 / 2004
27 / -
2003
0.55
Identified
2006-06-03
find_overl...
badger
 
11 CH242-30J21
ctg6009
bE30J21
EPN details
Analysed
03-JUN-06
CR956425.14
finished
77662 CHORI-242 3' / 5'
77245 / 1584
417 / 3
1580
0.25
Identified
2009-03-12
find_overl...
humpub
 
12 PigE-219N9
ctg6009
bT219N9
EPN details
Submitted to EMBL
17-MAY-07
CR956622.12
finished
174170 PigE 3' / 5'
121002 / 11525
53168 / -
11526
0.67
Identified
2005-11-03
find_overl...
badger
 
13 CH242-51O7
ctg6009
bE51O7
EPN details
Submitted to EMBL
17-MAY-07
CR956427.7
finished
187800 CHORI-242 3' / 5'
185801 / 1
- / -
2000
1.05
Identified
2006-01-13
find_overl...
badger
 
14 CH242-201A17
ctg6009
bE201A17
EPN details
Analysed
13-JAN-06
CR974588.18
finished
86219 CHORI-242 3' / 5'
86219 / 1995
- / -
2000
0.45
Identified
2006-01-13
find_overl...
badger
 
15 CH242-171I16
ctg6009
bE171I16
EPN details
Submitted to EMBL
17-MAY-07
CR956650.4
finished
165704 CHORI-242 3' / 3'
104844 / 73928
- / 10516
60866
0.14
Identified
2005-08-26
find_overl...
badger
 
16 PigE-201A17
ctg6009
bT201A17
EPN details
Submitted to EMBL
17-MAY-07
CR974452.4
finished
84444 PigE 3' / 3'
84444 / 157200
- / -
2000
1
Identified
2005-10-13
find_overl...
badger
 
17 PigE-204L22
ctg6009
bT204L22
EPN details
Submitted to EMBL
17-MAY-07
CR974432.6
finished
159182 PigE        

Statistics

Clone Summary

Number of gaps
0
Total clones
17
Clone HTGS Phases
finished
17
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
123,704
Total finished length of fin clones w/ overlap
2,249,403
Total finished length of fin clones w/o overlap
2,125,699
Total overlap length of fin+unfin clones
123,704
Total finished length of fin+unfin clones w/ overlap
2,249,403
Total finished length of fin+unfin clones w/o overlap
2,125,699

Dovetails

# rank accession status length date
1 9 CR956415.12 unfinished 70,940 Wed, 23 Apr 2014 01:58
2 10 CR956422.6 unfinished 1 Wed, 23 Apr 2014 01:58
3 10 CR956422.6 unfinished 27 Wed, 23 Apr 2014 01:58
4 11 CR956425.14 unfinished 417 Wed, 23 Apr 2014 01:58
5 12 CR956622.12 unfinished 3 Wed, 23 Apr 2014 01:58
6 12 CR956622.12 unfinished 53,168 Wed, 23 Apr 2014 01:58
7 16 CR974452.4 unfinished 10,516 Wed, 23 Apr 2014 01:58

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Other links

* quick link - http://q.sanger.ac.uk/3p3bwgwd