ChromoView - clone / Assembly sequencing status

Pig: Sub region SSC7_test2 (TPF updated: 2005-04-05)

TPF

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# Clone ext/Contig Clone int Acc/Fin
1 PigI-464E6
ctg7002
bI464E6
CR956416.5
finished
2 PigI-736G5
ctg7002
bI736G5
CR956388.7
finished
3 PigE-220E19
ctg7002
bT220E19
CR956377.9
finished
4 CH242-197B5
ctg7002
bE197B5
CR956632.4
finished
5 CH242-93P8
ctg7002
bE93P8
CR974574.10
finished
6 PigE-259M5
ctg7002
bT259M5
CR956428.10
finished
7 CH242-196P11
ctg7002
bE196P11
CR956379.5
finished
8 CH242-96L23

bE96L23
CR956433.5
finished
9 PigE-150P18
ctg7002
bT150P18
CR974479.17
finished
10 CH242-207C21
ctg7002
bE207C21
CT009690.15
finished
11 PigE-150I6
ctg7002
bT150I6
CR974460.5
finished
12 PigI-52G3
ctg7002
bI52G3
CR956364.13
finished
13 PigI-284F5
ctg7002
bI284F5
CR956398.4
unfinished
14 CH242-113D8
ctg7002
bE113D8
CT009664.17
finished
15 PigE-123H20
ctg7002
bT123H20
CR956410.6
finished
16 CH242-245E12
ctg7002
bE245E12
CR956360.10
finished
17 CH242-272H8
ctg7002
bE272H8
CT009542.22
finished
18 CH242-181F19
ctg7002
bE181F19
CR956370.6
finished
19 PigE-52G20
ctg7002
bT52G20
CR956412.5
finished
20 PigE-60M9
ctg7002
bT60M9
CR956431.10
finished
21 PigI-416G4
ctg7002
bI416G4
CR956369.6
finished
22 CH242-79N20
ctg7002
bE79N20
CR974593.9
finished
23 PigE-42A23
ctg7002
bT42A23
CR956629.5
finished
24 PigE-2M20
ctg7002
bT2M20
CR974581.7
finished
25 CH242-205N12
ctg7002
bE205N12
CR956396.6
finished
26 CH242-288P9
ctg7002
bE288P9
CR974587.14
finished
27 CH242-77B9
ctg7002
bE77B9
CR974450.13
finished
28 PigE-113P21
ctg7002
bT113P21
CT009701.6
finished
29 PigE-178B21
ctg7002
bT178B21
CR974468.5
finished
30 CH242-208O15
ctg7002
bE208O15
CR974564.11
finished
31 CH242-241E19
ctg7002
bE241E19
CR974434.12
finished
32 PigE-81M6
ctg7002
bT81M6
CT009683.6
finished
33 CH242-137E23
ctg7002
bE137E23
CT009503.7
finished
34 PigE-201H15
ctg7002
bT201H15
CT009693.5
finished
35 PigE-133M12
ctg7002
bT133M12
CR956391.5
finished

AGP

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AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 141597 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR956416.5 1 141597 +
141598 273667 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR956388.7 10388 142457 +
273668 496057 3 F CR956377.9
Double 3-prime join to 'CR956377.9'
1 222390 +
496058 501057 4 N 5000 Bad overlap - double 3 prime join    
501058 662289 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956632.4 1 161232 -
662290 726767 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR974574.10 2001 66478 +
726768 892382 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956428.10 2001 167615 +
892383 1071102 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956379.5 21338 200057 +
1071103 1150802 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956433.5 2001 81700 +
1150803 1299534 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR974479.17 2001 150732 +
1299535 1375710 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CT009690.15 1 76176 +
1375711 1497872 12 F CR974460.5
Double 5-prime join to 'CR974460.5'
1 122162 -
1497873 1502872 13 N 5000 Bad overlap - double 5 prime join    
1502873 1606070 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CR956364.13 1 103198 -
1606071 1656070 15 N 50000 clone yes
1656071 1838116 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CT009664.17 1 182046 +
1838117 2011603 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CR956410.6 2001 175487 +
2011604 2195110 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CR956360.10 2001 185507 +
2195111 2371009 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CT009542.22 2001 177899 +
2371010 2492631 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CR956370.6 55025 176646 -
2492632 2594901 21 F CR956412.5
Double 5-prime join to 'CR956412.5'
55672 157941 -
2594902 2599901 22 N 5000 Bad overlap - double 5 prime join    
2599902 2764988 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956431.10 41431 206517 +
2764989 2810563 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956369.6 94588 140162 +
2810564 2870665 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974593.9 2001 62102 +
2870666 3025194 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956629.5 1 154529 -
3025195 3055091 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974581.7 2001 31897 +
3055092 3228199 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956396.6 1 173108 -
3228200 3391291 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974587.14 2001 165092 +
3391292 3571828 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974450.13 2001 182537 +
3571829 3575706 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009701.6 52259 56136 +
3575707 3694401 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974468.5 2001 120695 +
3694402 3737001 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974564.11 2001 44600 +
3737002 3903557 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974434.12 2001 168556 +
3903558 3968064 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009683.6 42569 107075 -
3968065 4099982 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009503.7 46846 178763 +
4099983 4178265 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009693.5 4129 82411 +
4178266 4344277 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956391.5 1 166012 -

Details

Component Sanger::HumPub::ChromoView failed to execute

Statistics

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Clone Summary

Number of gaps
0
Total clones
35
Clone HTGS Phases
finished
34
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
407,804
Total finished length of fin clones w/ overlap
4,802,989
Total finished length of fin clones w/o overlap
4,395,185
Total overlap length of fin+unfin clones
456,933
Total finished length of fin+unfin clones w/ overlap
4,940,354
Total finished length of fin+unfin clones w/o overlap
4,483,421

AGP errors

# rank accession seq_start seq_end strand error date
1 21 CR956412.5 55,672 157,941 -1 Double 5-prime join to 'CR956412.5' Sat, 01 Aug 2015 03:08

Dovetails

# rank accession status length date
1 3 CR956377.9 unfinished 100,143 Sat, 01 Aug 2015 03:08
2 10 CT009690.15 unfinished 18,687 Sat, 01 Aug 2015 03:08
3 11 CR974460.5 unfinished 2,950 Sat, 01 Aug 2015 03:08
4 12 CR956364.13 unfinished 899 Sat, 01 Aug 2015 03:08
5 13 CR956398.4 unfinished 17,823 Sat, 01 Aug 2015 03:08
6 13 CR956398.4 unfinished 21,075 Sat, 01 Aug 2015 03:08
7 19 CR956412.5 unfinished 55,671 Sat, 01 Aug 2015 03:08
8 21 CR956369.6 unfinished 10,021 Sat, 01 Aug 2015 03:08
9 32 CT009683.6 unfinished 27,771 Sat, 01 Aug 2015 03:08
10 32 CT009683.6 unfinished 42,568 Sat, 01 Aug 2015 03:08
11 33 CT009503.7 unfinished 43,336 Sat, 01 Aug 2015 03:08

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Other links

* quick link - http://q.sanger.ac.uk/84lzao5k