ChromoView - clone / Assembly sequencing status

Pig: Sub region SSC7_test2 (TPF updated: 2005-04-05)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 PigI-464E6
ctg7002
bI464E6
EPN details
CR956416.5
finished
2 PigI-736G5
ctg7002
bI736G5
EPN details
CR956388.7
finished
3 PigE-220E19
ctg7002
bT220E19
EPN details
CR956377.9
finished
4 CH242-197B5
ctg7002
bE197B5
EPN details
CR956632.4
finished
5 CH242-93P8
ctg7002
bE93P8
EPN details
CR974574.10
finished
6 PigE-259M5
ctg7002
bT259M5
EPN details
CR956428.10
finished
7 CH242-196P11
ctg7002
bE196P11
EPN details
CR956379.5
finished
8 CH242-96L23

bE96L23
EPN details
CR956433.5
finished
9 PigE-150P18
ctg7002
bT150P18
EPN details
CR974479.17
finished
10 CH242-207C21
ctg7002
bE207C21
EPN details
CT009690.15
finished
11 PigE-150I6
ctg7002
bT150I6
EPN details
CR974460.5
finished
12 PigI-52G3
ctg7002
bI52G3
EPN details
CR956364.13
finished
13 PigI-284F5
ctg7002
bI284F5
EPN details
CR956398.4
unfinished
14 CH242-113D8
ctg7002
bE113D8
EPN details
CT009664.17
finished
15 PigE-123H20
ctg7002
bT123H20
EPN details
CR956410.6
finished
16 CH242-245E12
ctg7002
bE245E12
EPN details
CR956360.10
finished
17 CH242-272H8
ctg7002
bE272H8
EPN details
CT009542.22
finished
18 CH242-181F19
ctg7002
bE181F19
EPN details
CR956370.6
finished
19 PigE-52G20
ctg7002
bT52G20
EPN details
CR956412.5
finished
20 PigE-60M9
ctg7002
bT60M9
EPN details
CR956431.10
finished
21 PigI-416G4
ctg7002
bI416G4
EPN details
CR956369.6
finished
22 CH242-79N20
ctg7002
bE79N20
EPN details
CR974593.9
finished
23 PigE-42A23
ctg7002
bT42A23
EPN details
CR956629.5
finished
24 PigE-2M20
ctg7002
bT2M20
EPN details
CR974581.7
finished
25 CH242-205N12
ctg7002
bE205N12
EPN details
CR956396.6
finished
26 CH242-288P9
ctg7002
bE288P9
EPN details
CR974587.14
finished
27 CH242-77B9
ctg7002
bE77B9
EPN details
CR974450.13
finished
28 PigE-113P21
ctg7002
bT113P21
EPN details
CT009701.6
finished
29 PigE-178B21
ctg7002
bT178B21
EPN details
CR974468.5
finished
30 CH242-208O15
ctg7002
bE208O15
EPN details
CR974564.11
finished
31 CH242-241E19
ctg7002
bE241E19
EPN details
CR974434.12
finished
32 PigE-81M6
ctg7002
bT81M6
EPN details
CT009683.6
finished
33 CH242-137E23
ctg7002
bE137E23
EPN details
CT009503.7
finished
34 PigE-201H15
ctg7002
bT201H15
EPN details
CT009693.5
finished
35 PigE-133M12
ctg7002
bT133M12
EPN details
CR956391.5
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 141597 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR956416.5 1 141597 +
141598 273667 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 CR956388.7 10388 142457 +
273668 496057 3 F CR956377.9
Double 3-prime join to 'CR956377.9'
1 222390 +
496058 501057 4 N 5000 Bad overlap - double 3 prime join    
501058 662289 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956632.4 1 161232 -
662290 726767 6 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR974574.10 2001 66478 +
726768 892382 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956428.10 2001 167615 +
892383 1071102 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956379.5 21338 200057 +
1071103 1150802 9 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR956433.5 2001 81700 +
1150803 1299534 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CR974479.17 2001 150732 +
1299535 1375710 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 5 - 11 CT009690.15 1 76176 +
1375711 1497872 12 F CR974460.5
Double 5-prime join to 'CR974460.5'
1 122162 -
1497873 1502872 13 N 5000 Bad overlap - double 5 prime join    
1502873 1606070 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 14 - 14 CR956364.13 1 103198 -
1606071 1656070 15 N 50000 clone yes
1656071 1838116 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CT009664.17 1 182046 +
1838117 2011603 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CR956410.6 2001 175487 +
2011604 2195110 18 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CR956360.10 2001 185507 +
2195111 2371009 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CT009542.22 2001 177899 +
2371010 2492631 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 20 CR956370.6 55025 176646 -
2492632 2594901 21 F CR956412.5
Double 5-prime join to 'CR956412.5'
55672 157941 -
2594902 2599901 22 N 5000 Bad overlap - double 5 prime join    
2599902 2764988 23 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956431.10 41431 206517 +
2764989 2810563 24 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956369.6 94588 140162 +
2810564 2870665 25 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974593.9 2001 62102 +
2870666 3025194 26 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956629.5 1 154529 -
3025195 3055091 27 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974581.7 2001 31897 +
3055092 3228199 28 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956396.6 1 173108 -
3228200 3391291 29 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974587.14 2001 165092 +
3391292 3571828 30 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974450.13 2001 182537 +
3571829 3575706 31 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009701.6 52259 56136 +
3575707 3694401 32 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974468.5 2001 120695 +
3694402 3737001 33 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974564.11 2001 44600 +
3737002 3903557 34 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR974434.12 2001 168556 +
3903558 3968064 35 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009683.6 42569 107075 -
3968065 4099982 36 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009503.7 46846 178763 +
4099983 4178265 37 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CT009693.5 4129 82411 +
4178266 4344277 38 FClick to retrieve finished assembled sequence in green bar: rank(s) 23 - 38 CR956391.5 1 166012 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 PigI-464E6
ctg7002
bI464E6
EPN details
Submitted to EMBL
17-MAY-07
CR956416.5
finished
141597 SBAB bI Clones 3' / 5'
141597 / 10388
- / -
10387
0
Identified
2005-07-29
find_overl...
badger
 
2 PigI-736G5
ctg7002
bI736G5
EPN details
Submitted to EMBL
17-MAY-07
CR956388.7
finished
151383 SBAB bI Clones 3' / 3'
142457 / 122247
- / 100143
8928
0.75
Identified
2009-03-12
find_overl...
humpub
 
3 PigE-220E19
ctg7002
bT220E19
EPN details
Submitted to EMBL
17-MAY-07
CR956377.9
finished
222390 PigE 3' / 3'
222390 / 161232
- / -
24857
0.34
Identified
2005-08-05
find_overl...
badger
 
4 CH242-197B5
ctg7002
bE197B5
EPN details
Submitted to EMBL
17-MAY-07
CR956632.4
finished
186089 CHORI-242 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-08-26
find_overl...
badger
 
5 CH242-93P8
ctg7002
bE93P8
EPN details
Analysed
25-AUG-05
CR974574.10
finished
66478 CHORI-242 3' / 5'
66478 / 2001
- / -
2000
0.1
Identified
2009-03-12
find_overl...
humpub
 
6 PigE-259M5
ctg7002
bT259M5
EPN details
Cancelled
19-JUL-10
CR956428.10
finished
167615 PigE 3' / 5'
167615 / 21338
- / -
21345
0.23
Identified
2005-09-14
find_overl...
badger
 
7 CH242-196P11
ctg7002
bE196P11
EPN details
Submitted to EMBL
17-MAY-07
CR956379.5
finished
200057 CHORI-242 3' / 5'
200057 / 2001
- / -
2000
0
Identified
2005-07-29
find_overl...
badger
 
8 CH242-96L23

bE96L23
EPN details
Submitted to EMBL
17-MAY-07
CR956433.5
finished
81700 CHORI-242 3' / 5'
81700 / 2001
- / -
2000
0.3
Identified
2006-03-08
find_overl...
badger
 
9 PigE-150P18
ctg7002
bT150P18
EPN details
Analysed
08-MAR-06
CR974479.17
finished
152730 PigE 3' / 5'
150732 / 1
- / -
2000
0.35
Identified
2006-03-08
find_overl...
badger
 
10 CH242-207C21
ctg7002
bE207C21
EPN details
Analysed
25-JAN-06
CT009690.15
finished
94949 CHORI-242 3' / 5'
76176 / 2951
18687 / 2950
87
16.28
Identified
2009-03-12
find_overl...
humpub
 
11 PigE-150I6
ctg7002
bT150I6
EPN details
Submitted to EMBL
17-MAY-07
CR974460.5
finished
122162 PigE 5' / 3'
1 / 103198
- / -
2000
0.1
Identified
2005-09-22
find_overl...
badger
 
12 PigI-52G3
ctg7002
bI52G3
EPN details
Submitted to EMBL
17-MAY-07
CR956364.13
finished
105198 SBAB bI Clones 5' / 3'
900 / 116229
899 / 21075
61
16.39
Identified
2005-09-02
find_overl...
badger
 
13 PigI-284F5
ctg7002
bI284F5
EPN details
Cancelled
03-OCT-05
CR956398.4
unfinished
137365 SBAB bI Clones 3' / 5'
119542 / 49044
17823 / -
49068
0.65
Identified
2009-03-12
find_overl...
humpub
 
14 CH242-113D8
ctg7002
bE113D8
EPN details
Analysed
11-JAN-06
CT009664.17
finished
182046 CHORI-242 3' / 5'
182046 / 2001
- / -
2000
0
Identified
2006-01-12
find_overl...
badger
 
15 PigE-123H20
ctg7002
bT123H20
EPN details
Submitted to EMBL
17-MAY-07
CR956410.6
finished
175487 PigE 3' / 5'
175487 / 2001
- / -
2000
0.05
Identified
2009-03-12
find_overl...
humpub
 
16 CH242-245E12
ctg7002
bE245E12
EPN details
Submitted to EMBL
17-MAY-07
CR956360.10
finished
185507 CHORI-242 3' / 5'
185507 / 2001
- / -
2000
0.05
Identified
2006-05-17
find_overl...
badger
 
17 CH242-272H8
ctg7002
bE272H8
EPN details
Analysed
17-MAY-06
CT009542.22
finished
177899 CHORI-242 3' / 3'
177899 / 176646
- / -
2000
0
Identified
2006-05-17
find_overl...
badger
 
18 CH242-181F19
ctg7002
bE181F19
EPN details
Submitted to EMBL
17-MAY-07
CR956370.6
finished
178646 CHORI-242 5' / 5'
55025 / 1
- / -
55199
2.48
Identified
2005-09-14
find_overl...
badger
 
19 PigE-52G20
ctg7002
bT52G20
EPN details
Cancelled
22-SEP-09
CR956412.5
finished
157941 PigE 5' / 5'
55672 / 41431
55671 / -
41452
0.95
Identified
2009-03-12
find_overl...
humpub
 
20 PigE-60M9
ctg7002
bT60M9
EPN details
Cancelled
22-SEP-09
CR956431.10
finished
206517 PigE 3' / 5'
206517 / 94588
- / 10021
84662
0.66
Identified
2005-10-27
find_overl...
badger
 
21 PigI-416G4
ctg7002
bI416G4
EPN details
Submitted to EMBL
17-MAY-07
CR956369.6
finished
140162 SBAB bI Clones 3' / 5'
140162 / 2001
- / -
2000
0
Identified
2009-03-12
find_overl...
humpub
 
22 CH242-79N20
ctg7002
bE79N20
EPN details
Submitted to EMBL
17-MAY-07
CR974593.9
finished
62102 CHORI-242 3' / 3'
62102 / 154529
- / -
2000
0.75
Identified
2009-03-12
find_overl...
humpub
 
23 PigE-42A23
ctg7002
bT42A23
EPN details
Submitted to EMBL
17-MAY-07
CR956629.5
finished
156529 PigE 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-07-29
find_overl...
badger
 
24 PigE-2M20
ctg7002
bT2M20
EPN details
Submitted to EMBL
17-MAY-07
CR974581.7
finished
31897 PigE 3' / 3'
31897 / 173108
- / -
2000
0
Identified
2005-08-05
find_overl...
badger
 
25 CH242-205N12
ctg7002
bE205N12
EPN details
Submitted to EMBL
17-MAY-07
CR956396.6
finished
175108 CHORI-242 5' / 5'
1 / 2001
- / -
2000
0
Identified
2005-11-15
find_overl...
badger
 
26 CH242-288P9
ctg7002
bE288P9
EPN details
Submitted to EMBL
17-MAY-07
CR974587.14
finished
165092 CHORI-242 3' / 5'
165092 / 2001
- / -
2000
0
Identified
2005-11-15
find_overl...
badger
 
27 CH242-77B9
ctg7002
bE77B9
EPN details
Submitted to EMBL
17-MAY-07
CR974450.13
finished
182537 CHORI-242 3' / 5'
182537 / 52259
- / -
52294
2.2
Identified
2009-03-12
find_overl...
humpub
 
28 PigE-113P21
ctg7002
bT113P21
EPN details
Submitted to EMBL
17-MAY-07
CT009701.6
finished
56136 PigE 3' / 5'
56136 / 2001
- / -
2000
0
Identified
2005-09-02
find_overl...
badger
 
29 PigE-178B21
ctg7002
bT178B21
EPN details
Submitted to EMBL
17-MAY-07
CR974468.5
finished
120695 PigE 3' / 5'
120695 / 2001
- / -
2000
0.05
Identified
2005-07-29
find_overl...
badger
 
30 CH242-208O15
ctg7002
bE208O15
EPN details
Submitted to EMBL
17-MAY-07
CR974564.11
finished
44600 CHORI-242 3' / 5'
44600 / 2001
- / -
2000
0
Identified
2005-08-26
find_overl...
badger
 
31 CH242-241E19
ctg7002
bE241E19
EPN details
Submitted to EMBL
17-MAY-07
CR974434.12
finished
186072 CHORI-242 3' / 3'
168556 / 107075
- / 27771
17517
1.47
Identified
2005-09-02
find_overl...
badger
 
32 PigE-81M6
ctg7002
bT81M6
EPN details
Submitted to EMBL
17-MAY-07
CT009683.6
finished
134846 PigE 5' / 5'
42569 / 46846
42568 / -
46947
3.89
Identified
2009-03-12
find_overl...
humpub
 
33 CH242-137E23
ctg7002
bE137E23
EPN details
Submitted to EMBL
17-MAY-07
CT009503.7
finished
222099 CHORI-242 3' / 5'
178763 / 4129
43336 / -
4129
0.02
Identified
2005-11-17
find_overl...
badger
 
34 PigE-201H15
ctg7002
bT201H15
EPN details
Submitted to EMBL
17-MAY-07
CT009693.5
finished
82411 PigE 3' / 3'
82411 / 166012
- / -
2000
0
Identified
2009-03-12
find_overl...
humpub
 
35 PigE-133M12
ctg7002
bT133M12
EPN details
Submitted to EMBL
17-MAY-07
CR956391.5
finished
168012 PigE        

Statistics

Clone Summary

Number of gaps
0
Total clones
35
Clone HTGS Phases
finished
34
unfinished
1
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
407,804
Total finished length of fin clones w/ overlap
4,802,989
Total finished length of fin clones w/o overlap
4,395,185
Total overlap length of fin+unfin clones
456,933
Total finished length of fin+unfin clones w/ overlap
4,940,354
Total finished length of fin+unfin clones w/o overlap
4,483,421

AGP errors

# rank accession seq_start seq_end strand error date
1 21 CR956412.5 55,672 157,941 -1 Double 5-prime join to 'CR956412.5' Sun, 23 Nov 2014 01:42

Dovetails

# rank accession status length date
1 3 CR956377.9 unfinished 100,143 Sun, 23 Nov 2014 01:42
2 10 CT009690.15 unfinished 18,687 Sun, 23 Nov 2014 01:42
3 11 CR974460.5 unfinished 2,950 Sun, 23 Nov 2014 01:42
4 12 CR956364.13 unfinished 899 Sun, 23 Nov 2014 01:42
5 13 CR956398.4 unfinished 17,823 Sun, 23 Nov 2014 01:42
6 13 CR956398.4 unfinished 21,075 Sun, 23 Nov 2014 01:42
7 19 CR956412.5 unfinished 55,671 Sun, 23 Nov 2014 01:42
8 21 CR956369.6 unfinished 10,021 Sun, 23 Nov 2014 01:42
9 32 CT009683.6 unfinished 27,771 Sun, 23 Nov 2014 01:42
10 32 CT009683.6 unfinished 42,568 Sun, 23 Nov 2014 01:42
11 33 CT009503.7 unfinished 43,336 Sun, 23 Nov 2014 01:42

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Other links

* quick link - http://q.sanger.ac.uk/84lzao5k