ChromoView - clone / Assembly sequencing status

Mouse: Sub region WUgaps_16 (TPF updated: 2005-03-22)

TPF

# Clone ext/Contig Clone int Acc/Fin
1 RP24-68D23
ctg16000
bN68D23
AC154524.2
finished
2 RP24-109N5
ctg16000
bN109N5
AC155257.1
finished
  GAP (type-4) length unknown    
4 RP24-455C11
ctg16000
bN455C11
AC154188.2
finished
5 RP23-238B16
ctg16000
bM238B16
AC154551.2
finished
  GAP (type-4) length unknown    
7 RP24-383B6
ctg16000
bN383B6
AC154735.2
finished
8 RP23-375N17

bM375N17
AC154578.2
finished
  GAP (type-4) length unknown    
10 RP24-439D9
ctg16000
bN439D9
AC156014.2
finished
11 RP23-100F7
ctg16000
bM100F7
AC154775.2
finished
  GAP (type-4) length unknown    
13 RP24-370O15
ctg16008
bN370O15
AC154719.2
finished
14 RP24-269E24
ctg16008
bN269E24
AC154278.2
finished
  GAP (type-4) length unknown    
16 RP23-325D11
ctg16008
bM325D11
AC154622.2
finished
17 RP24-239F20
ctg16008
bN239F20
AC154403.2
finished
  GAP (type-4) length unknown    
19 RP24-532L22
ctg16008
bN532L22
AC154814.2
finished
20 RP23-65F24
ctg16008
bM65F24
AC164088.2
finished

AGP

AGP_S AGP_E Rank Status Acc.ver Clone_S Clone_E Str
1 163914 1 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC154524.2 1 163914 +
163915 341964 2 FClick to retrieve finished assembled sequence in green bar: rank(s) 1 - 2 AC155257.1 7882 185931 +
341965 391964 3 N 50000 contig no
391965 564425 4 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC154188.2 1 172461 +
564426 649599 5 FClick to retrieve finished assembled sequence in green bar: rank(s) 4 - 5 AC154551.2 1 85174 -
649600 699599 6 N 50000 contig no
699600 923780 7 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AC154735.2 1 224181 +
923781 1095440 8 FClick to retrieve finished assembled sequence in green bar: rank(s) 7 - 8 AC154578.2 31370 203029 +
1095441 1145440 9 N 50000 contig no
1145441 1338234 10 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AC156014.2 1479 194272 -
1338235 1457230 11 FClick to retrieve finished assembled sequence in green bar: rank(s) 10 - 11 AC154775.2 73497 192492 +
1457231 1507230 12 N 50000 contig no
1507231 1646658 13 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 AC154719.2 23981 163408 -
1646659 1799912 14 FClick to retrieve finished assembled sequence in green bar: rank(s) 13 - 14 AC154278.2 326 153579 +
1799913 1849912 15 N 50000 contig no
1849913 1966743 16 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 AC154622.2 72801 189631 -
1966744 2094212 17 FClick to retrieve finished assembled sequence in green bar: rank(s) 16 - 17 AC154403.2 3919 131387 +
2094213 2144212 18 N 50000 contig no
2144213 2287747 19 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 AC154814.2 11798 155332 -
2287748 2516455 20 FClick to retrieve finished assembled sequence in green bar: rank(s) 19 - 20 AC164088.2 1 228708 -

Details

# Clone ext/Contig Clone int Status/Date Acc/Fin Length Library OL Pos OL Qual OL details Cert
1 RP24-68D23
ctg16000
bN68D23
-
-
AC154524.2
finished
252926 RPCI-24 3' / 5'
163914 / 7882
89012 / 7783
99
5.05
Identified
2005-04-08
find_overl...
badger
 
2 RP24-109N5
ctg16000
bN109N5
-
-
AC155257.1
finished
185931 RPCI-24        
  GAP (type-4) length unknown                  
4 RP24-455C11
ctg16000
bN455C11
-
-
AC154188.2
finished
177978 RPCI-24 3' / 3'
172461 / 85174
- / 44112
5540
3.7
Identified
2005-04-08
find_overl...
badger
 
5 RP23-238B16
ctg16000
bM238B16
-
-
AC154551.2
finished
129286 RPCI-23        
  GAP (type-4) length unknown                  
7 RP24-383B6
ctg16000
bN383B6
-
-
AC154735.2
finished
224440 RPCI-24 3' / 5'
224181 / 31370
97 / 31369
165
9.26
Identified
2005-11-22
find_overl...
badger
 
8 RP23-375N17

bM375N17
-
-
AC154578.2
finished
203029 RPCI-23        
  GAP (type-4) length unknown                  
10 RP24-439D9
ctg16000
bN439D9
-
-
AC156014.2
finished
194272 RPCI-24 5' / 5'
1479 / 73497
1396 / 73496
83
2.44
Identified
2005-04-08
find_overl...
badger
 
11 RP23-100F7
ctg16000
bM100F7
-
-
AC154775.2
finished
192492 RPCI-23        
  GAP (type-4) length unknown                  
13 RP24-370O15
ctg16008
bN370O15
-
-
AC154719.2
finished
163408 RPCI-24 5' / 5'
23981 / 326
23980 / 247
78
0
Identified
2005-10-08
find_overl...
badger
 
14 RP24-269E24
ctg16008
bN269E24
-
-
AC154278.2
finished
153579 RPCI-24        
  GAP (type-4) length unknown                  
16 RP23-325D11
ctg16008
bM325D11
-
-
AC154622.2
finished
189631 RPCI-23 5' / 5'
72801 / 3919
72800 / 1869
2074
15.04
Identified
2005-07-22
find_overl...
badger
 
17 RP24-239F20
ctg16008
bN239F20
-
-
AC154403.2
finished
131387 RPCI-24        
  GAP (type-4) length unknown                  
19 RP24-532L22
ctg16008
bN532L22
-
-
AC154814.2
finished
155332 RPCI-24 5' / 3'
11798 / 228708
11661 / 11473
140
12.5
Identified
2005-12-01
find_overl...
badger
 
20 RP23-65F24
ctg16008
bM65F24
-
-
AC164088.2
finished
240181 RPCI-23        

Statistics

Clone Summary

Number of gaps
6
Gap types
type-4
6
Total clones
14
Clone HTGS Phases
finished
14
Number of clones w/o accession
0

Overlap Summary

Total overlap length of fin clones
8,179
Total finished length of fin clones w/ overlap
2,390,843
Total finished length of fin clones w/o overlap
2,382,664
Total overlap length of fin+unfin clones
8,179
Total finished length of fin+unfin clones w/ overlap
2,390,843
Total finished length of fin+unfin clones w/o overlap
2,382,664

Dovetails

# rank accession status length date
1 1 AC154524.2 unfinished 89,012 Fri, 01 Aug 2014 00:49
2 2 AC155257.1 unfinished 7,783 Fri, 01 Aug 2014 00:49
3 5 AC154551.2 unfinished 44,112 Fri, 01 Aug 2014 00:49
4 7 AC154735.2 unfinished 97 Fri, 01 Aug 2014 00:49
5 8 AC154578.2 unfinished 31,369 Fri, 01 Aug 2014 00:49
6 10 AC156014.2 unfinished 1,396 Fri, 01 Aug 2014 00:49
7 11 AC154775.2 unfinished 73,496 Fri, 01 Aug 2014 00:49
8 13 AC154719.2 unfinished 23,980 Fri, 01 Aug 2014 00:49
9 14 AC154278.2 unfinished 247 Fri, 01 Aug 2014 00:49
10 16 AC154622.2 unfinished 72,800 Fri, 01 Aug 2014 00:49
11 17 AC154403.2 unfinished 1,869 Fri, 01 Aug 2014 00:49
12 19 AC154814.2 unfinished 11,661 Fri, 01 Aug 2014 00:49
13 20 AC164088.2 unfinished 11,473 Fri, 01 Aug 2014 00:49

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Other links

* quick link - http://q.sanger.ac.uk/a59hfgmm